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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 2051-2100 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_8091
Species: Alcaligenes faecalis (50%)
2 1039 bp 66.12 4.19 88.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_8347
Species: Ochrobactrum sp. CDB2 (50%)
2 1013 bp 65.45 3.26 86.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_3228
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated (50%)
2 2265 bp 62.21 4.77 87.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_4508
Species: Mesorhizobium sp. L48C026A00 (50%)
2 1694 bp 63.99 3.63 89.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_6556
Species: Thauera sp. 63 (50%)
2 1242 bp 60.39 22.10 93.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_7068
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1162 bp 67.73 3.10 89.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_7580
Species: Skermanella aerolata (50%)
2 1099 bp 63.24 5.87 86.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_8092
Species: Mesorhizobium plurifarium (50%)
2 1582 bp 69.79 4.36 100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4765
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1624 bp 67.98 4.34 81.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_5789
Species: Acidovorax sp. MR-S7 (50%)
2 1383 bp 53.94 11.93 90.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_6045
Species: Thermincola potens (50%)
2 1333 bp 67.44 4.73 100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6813
Species: Mesorhizobium sp. ORS3359 (50%)
2 1199 bp 63.80 4.13 98.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6814
Species: Novosphingobium subterraneum (50%)
2 1199 bp 61.13 4.00 47.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_7070
Species: Mesorhizobium australicum (50%)
2 1162 bp 66.52 4.00 99.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_7326 2 1131 bp 64.54 4.91 90.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_7582
Species: Mesorhizobium sp. LNHC220B00 (100%)
2 1099 bp 67.15 3.55 101.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_8094
Species: BJP_IG2103_Dechloromonas_60_92 (50%)
2 1039 bp 64.39 4.91 87.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_8350
Species: Mesorhizobium sp. LNHC221B00 (50%)
2 1013 bp 65.45 3.85 99.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_3999
Species: Bosea sp. LC85 (50%)
2 1882 bp 61.21 3.59 93.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_4767
Species: Hoeflea sp. BAL378 (100%)
2 1623 bp 63.83 3.70 92.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_5535
Species: Paracoccus sp. 5503 (50%)
2 1437 bp 65.41 4.18 92.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_6815
Species: Mesorhizobium sp. L48C026A00 (50%)
2 1199 bp 61.05 3.00 98.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_7839
Species: Devosia sp. DDB001 (50%)
2 1070 bp 65.98 5.33 99.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_8095
Species: Mesorhizobium sp. STM 4661 (50%)
2 1039 bp 60.64 2.89 68.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_5280
Species: Mesorhizobium huakuii (50%)
2 1497 bp 65.46 3.41 100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_6304
Species: Mesorhizobium plurifarium (50%)
2 1289 bp 68.19 4.42 99.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6560
Species: Bradyrhizobium elkanii (50%)
2 1241 bp 63.17 3.14 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_6816
Species: Aquamicrobium defluvii (50%)
2 1199 bp 65.14 4.50 79.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_7072
Species: Bosea sp. LC85 (100%)
2 1162 bp 69.62 4.39 66.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_7840
Species: GWF1_Rhodobacteraceae_65_7_curated (50%)
2 1070 bp 62.71 4.77 77.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_2977
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2425 bp 57.24 8.10 89.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_4513
Species: Xanthobacter autotrophicus (50%)
2 1693 bp 61.08 3.72 94.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_6561
Species: Mesorhizobium sp. LNHC252B00 (50%)
2 1241 bp 62.53 4.35 80.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_7329
Species: Sinorhizobium medicae (50%)
2 1130 bp 60.27 2.39 81.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_7585
Species: Paenibacillus sp. FSL R7-277 (50%)
2 1099 bp 63.51 5.73 86.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_7841
Species: Mesorhizobium australicum (50%)
2 1070 bp 63.74 4.21 84.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_8353
Species: Rhizobium sp. YS-1r (50%)
2 1013 bp 67.72 4.59 100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4002
Species: Mesorhizobium amorphae (50%)
2 1881 bp 60.18 4.15 67.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_5794
Species: Bordetella pertussis (50%)
2 1382 bp 69.75 4.99 97.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_7586
Species: Rhodovulum sp. PH10 (50%)
2 1099 bp 60.96 4.23 78.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_7842
Species: Aquamicrobium defluvii (50%)
2 1070 bp 69.07 6.17 77.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_4515
Species: Bosea sp. LC85 (100%)
2 1691 bp 65.52 3.90 87.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_5027 2 1557 bp 63.71 4.34 96.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_5283
Species: Persephonella marina (50%)
2 1497 bp 63.59 3.71 95.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_6563
Species: Alicycliphilus sp. B1 (50%)
2 1241 bp 74.21 5.56 99.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_7587
Species: Variovorax paradoxus (100%)
2 1098 bp 69.31 5.19 100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8099
Species: Mesorhizobium sp. STM 4661 (50%)
2 1038 bp 61.85 3.76 86.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_4772
Species: Cupriavidus sp. HPC(L) (50%)
2 1622 bp 50.68 5.09 95.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_5028
Species: Rhizobium leguminosarum (50%)
2 1557 bp 59.47 3.66 46.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_5284
Species: Mesorhizobium australicum (50%)
2 1496 bp 67.18 3.51 100.07
Displaying items 2051-2100 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.