ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2101-2150 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7076 Species: Rhodovulum sp. PH10 (50%)	2	1161 bp	61.93	4.39	74.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_8100 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1038 bp	68.50	3.32	89.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_3493 Species: Sinorhizobium fredii (50%)	2	2085 bp	67.67	4.89	99.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_4005 Species: Mesorhizobium amorphae (50%)	2	1880 bp	63.51	4.07	85.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_4517 Species: Pusillimonas sp. T7-7 (50%)	2	1691 bp	64.87	6.39	73.63
Knockout_Variovorax_02_2024_K_none_B1_day_6_4773 Species: Bosea sp. LC85 (50%)	2	1622 bp	63.32	4.62	61.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_5029 Species: Ralstonia pickettii (50%)	2	1557 bp	61.01	7.23	93.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_6053 Species: Octadecabacter arcticus (50%)	2	1332 bp	63.14	4.17	75.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_6821 Species: Grimontia hollisae (100%)	2	1198 bp	65.69	4.88	100.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_7077 Species: Acidovorax delafieldii (50%)	2	1161 bp	58.74	6.72	82.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_7589 Species: Bosea sp. LC85 (100%)	2	1098 bp	65.66	4.92	85.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_4262 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1784 bp	73.65	6.05	97.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_5030 Species: Mesorhizobium loti (50%)	2	1557 bp	63.84	3.66	87.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_5798 Species: Herbaspirillum sp. TSA66 (50%)	2	1381 bp	63.50	5.43	91.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_6310 Species: Mesorhizobium sp. LNHC209A00 (50%)	2	1288 bp	69.95	3.49	100.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_7590 Species: Shinella sp. DD12 (50%)	2	1098 bp	60.20	2.46	82.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_8102 Species: Pelagibaca bermudensis (50%)	2	1038 bp	61.08	4.91	64.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_8358 Species: Sinorhizobium meliloti (50%)	2	1012 bp	69.07	2.82	99.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_3239 Species: Paracoccus halophilus (50%)	2	2258 bp	66.21	5.31	85.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_4519 Species: Novosphingobium tardaugens (50%)	2	1689 bp	73.59	7.10	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_6055 Species: Escherichia coli (100%)	2	1331 bp	52.82	1030.39	95.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_6311 Species: Mesorhizobium ciceri (50%)	2	1288 bp	64.67	4.43	89.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_7079 Species: Mesorhizobium sp. LNHC252B00 (50%)	2	1161 bp	63.57	4.26	87.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_7847 Species: Beijerinckia indica (50%)	2	1070 bp	63.74	2.80	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8359 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1012 bp	60.77	2.22	87.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_4008 Species: RifCSPlowO2_12_Pseudomonas_60_38_curated (50%)	2	1879 bp	65.19	7.03	99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_5544 Species: Thioflavicoccus mobilis (50%)	2	1434 bp	70.22	5.02	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_7848 Species: Bosea sp. LC85 (100%)	2	1070 bp	67.57	5.61	93.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_8360 Species: Brevundimonas diminuta (50%)	2	1012 bp	66.11	2.96	100.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_3241 Species: Rhodobacter sphaeroides (100%)	2	2257 bp	64.47	4.52	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_5801 Species: Alcanivorax dieselolei (50%)	2	1380 bp	60.65	3.70	95.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_6057 Species: Mesorhizobium amorphae (50%)	2	1330 bp	71.05	3.83	100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6569 Species: Mesorhizobium sp. ORS3359 (50%)	2	1240 bp	65.48	4.23	99.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_7337 Species: Mesorhizobium sp. LNHC232B00 (50%)	2	1129 bp	67.76	4.12	88.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_7593 Species: Devosia epidermidihirudinis (50%)	2	1097 bp	67.91	4.24	97.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_7849 Species: Bosea sp. LC85 (100%)	2	1070 bp	68.22	3.36	95.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_5802 Species: Mesorhizobium plurifarium (50%)	2	1380 bp	63.91	3.48	77.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_6058 Species: Mesorhizobium amorphae (50%)	2	1330 bp	64.81	4.06	84.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_8106 Species: Ensifer adhaerens (100%)	2	1038 bp	66.09	3.47	100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_5803 Species: Microvirga lotononidis (50%)	2	1379 bp	64.61	3.81	85.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_6059 Species: Bosea sp. LC85 (100%)	2	1330 bp	67.07	3.83	93.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_6827 Species: Martelella endophytica (50%)	2	1196 bp	65.22	5.64	99.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_7339 Species: Bosea sp. LC85 (50%)	2	1129 bp	64.57	3.19	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_8107 Species: Inquilinus limosus (50%)	2	1038 bp	69.46	5.49	91.04
Knockout_Variovorax_02_2024_K_none_B1_day_6_3500 Species: Mesorhizobium plurifarium (50%)	2	2082 bp	53.46	4.47	86.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_6828 Species: Bradyrhizobium japonicum (50%)	2	1196 bp	62.71	5.27	72.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_7852 Species: Brevundimonas diminuta (100%)	2	1070 bp	67.38	4.35	67.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_8108 Species: Mesorhizobium sp. LNHC209A00 (50%)	2	1038 bp	64.64	4.05	97.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_5037 Species: Leisingera sp. ANG-Vp (50%)	2	1554 bp	61.26	3.28	69.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_6573 Species: Asticcacaulis benevestitus (50%)	2	1239 bp	56.17	4.36	98.06

Displaying items 2101-2150 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help