ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2201-2250 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_3256 Species: Bradyrhizobium sp. BTAi1 (100%)	2	2246 bp	64.16	7.55	69.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_5560 Species: bacterium YEK0313 (50%)	2	1429 bp	58.85	4.20	66.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_6328 Species: Mesorhizobium loti (50%)	2	1285 bp	66.30	4.44	87.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_6840 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1194 bp	62.48	4.15	84.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_7864 Species: Burkholderia mallei (50%)	2	1068 bp	60.67	3.65	66.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_8120	2	1036 bp	61.78	3.62	83.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_4025 Species: Bosea sp. LC85 (100%)	2	1873 bp	65.46	4.89	92.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_4281 Species: Bradyrhizobium elkanii (50%)	2	1780 bp	63.54	7.58	64.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_5817 Species: Phaeobacter inhibens (50%)	2	1377 bp	69.06	5.99	93.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_6073 Species: Aquamicrobium defluvii (50%)	2	1328 bp	59.94	5.31	82.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_6841 Species: Chelativorans sp. BNC1 (50%)	2	1194 bp	57.71	3.27	91.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_8377 Species: Hyphomicrobium denitrificans (50%)	2	1011 bp	66.17	4.60	88.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_5818 Species: Roseobacter sp. GAI101 (50%)	2	1376 bp	60.17	4.47	93.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_6842 Species: Pseudomonas fluorescens (50%)	2	1194 bp	67.50	3.27	82.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_7354 Species: Mesorhizobium australicum (50%)	2	1127 bp	66.99	3.73	96.63
Knockout_Variovorax_02_2024_K_none_B1_day_6_7866 Species: Mesorhizobium amorphae (50%)	2	1068 bp	62.83	3.37	90.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_8378 Species: Ruegeria pomeroyi (50%)	2	1011 bp	67.46	4.45	99.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_3259 Species: Roseivivax isoporae (50%)	2	2245 bp	63.16	4.68	79.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_6075 Species: Rhizobium sp. (50%)	2	1328 bp	64.76	3.95	93.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_3516 Species: Roseivivax halodurans (100%)	2	2076 bp	64.21	4.34	90.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_4284 Species: Asticcacaulis benevestitus (50%)	2	1778 bp	62.04	4.89	87.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_6076 Species: Nitrobacter winogradskyi (50%)	2	1328 bp	56.85	3.84	57.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_8380 Species: Mesorhizobium sp. ORS3324 (50%)	2	1011 bp	68.84	4.45	97.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_4029 Species: RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated (50%)	2	1872 bp	69.93	5.13	97.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_4541 Species: Bosea sp. LC85 (100%)	2	1680 bp	67.74	3.84	89.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_4797 Species: Agrobacterium tumefaciens (50%)	2	1616 bp	64.05	4.46	91.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_5053 Species: Mesorhizobium loti (50%)	2	1550 bp	67.42	3.58	99.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_5309 Species: Aquamicrobium defluvii (50%)	2	1492 bp	66.76	3.82	88.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_6333 Species: Bosea sp. LC85 (50%)	2	1284 bp	69.86	4.09	99.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_7357 Species: Bosea sp. LC85 (100%)	2	1126 bp	71.05	4.00	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7613 Species: Mesorhizobium amorphae (100%)	2	1095 bp	60.82	3.84	78.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_8125 Species: Mesorhizobium loti (50%)	2	1035 bp	66.18	3.77	88.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_3262 Species: Rhizobium sp. Pop5 (100%)	2	2241 bp	67.20	5.15	97.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_4542 Species: Devosia limi (100%)	2	1680 bp	67.32	5.00	90.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_5566 Species: Mesorhizobium opportunistum (50%)	2	1428 bp	66.39	4.20	90.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_6846 Species: Azospirillum lipoferum (100%)	2	1193 bp	67.56	5.53	99.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_7102 Species: Rhizobium mesoamericanum (50%)	2	1158 bp	54.66	2.85	75.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_2751 Species: Cyanobium gracile (50%)	2	2589 bp	56.24	10.89	37.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_7103 Species: Mesorhizobium sp. L48C026A00 (50%)	2	1158 bp	68.05	4.27	97.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_8383	2	1010 bp	61.09	3.27	100.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_3520 Species: Nitrincola lacisaponensis (50%)	2	2074 bp	69.14	5.64	90.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_4544 Species: Bosea sp. LC85 (100%)	2	1680 bp	67.80	3.75	74.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_5312 Species: Mesorhizobium loti (50%)	2	1491 bp	64.79	4.23	77.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_5568 Species: Azospirillum brasilense (50%)	2	1428 bp	67.23	6.41	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_4545 Species: Bradyrhizobium sp. DFCI-1 (50%)	2	1680 bp	69.88	7.86	90.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_5057 Species: Pseudomonas bauzanensis (100%)	2	1549 bp	62.88	4.26	99.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_5569	2	1427 bp	59.92	4.41	20.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_6849 Species: Bosea sp. LC85 (100%)	2	1193 bp	69.40	3.77	98.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_7873 Species: Mesorhizobium sp. L2C084A000 (50%)	2	1067 bp	67.76	4.22	100.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_4546 Species: Mesorhizobium sp. ORS3324 (50%)	2	1680 bp	68.15	4.20	96.43

Displaying items 2201-2250 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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