ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2251-2300 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_6594 Species: Mesorhizobium opportunistum (50%)	2	1237 bp	66.29	4.37	93.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_7362 Species: Rhodovulum sp. PH10 (100%)	2	1126 bp	61.81	4.26	97.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_8386 Species: Bosea sp. LC85 (100%)	2	1010 bp	67.82	5.05	95.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_3523 Species: RIFCSPLOWO2_02_FULL_NC10_66_22_curated (50%)	2	2073 bp	62.81	4.85	85.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_6339 Species: Pseudomonas bauzanensis (50%)	2	1283 bp	60.80	5.38	77.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_6851 Species: Mesorhizobium sp. L2C084A000 (100%)	2	1193 bp	64.71	3.77	100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_7107 Species: Massilia sp. LC238 (50%)	2	1157 bp	62.58	13.87	93.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_7619 Species: Brevundimonas sp. KM4 (100%)	2	1095 bp	67.03	4.66	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8131 Species: Bosea sp. LC85 (50%)	2	1035 bp	67.34	2.32	49.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_4036 Species: Saccharopolyspora erythraea (50%)	2	1870 bp	61.02	4.41	81.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_4292 Species: Microvirga aerilata (50%)	2	1775 bp	66.03	6.25	84.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_4548 Species: Sinorhizobium sp. M14 (50%)	2	1679 bp	58.73	3.48	70.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_5060 Species: Bosea sp. LC85 (100%)	2	1549 bp	64.69	4.65	85.99
Knockout_Variovorax_02_2024_K_none_B1_day_6_5316 Species: Agrobacterium tumefaciens (50%)	2	1490 bp	67.25	3.62	95.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_6596 Species: Pseudomonas bauzanensis (50%)	2	1237 bp	66.77	5.21	89.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_7108 Species: Conexibacter woesei (50%)	2	1157 bp	64.91	6.87	98.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_7364 Species: Mesorhizobium sp. LSJC280B00 (50%)	2	1126 bp	63.32	4.00	63.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_4293 Species: Rhodobacter sphaeroides (100%)	2	1774 bp	64.71	4.65	93.01
Knockout_Variovorax_02_2024_K_none_B1_day_6_5061 Species: Sinorhizobium fredii (50%)	2	1548 bp	64.02	6.30	94.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_5573 Species: RIFCSPLOWO2_02_FULL_NC10_66_22_curated (50%)	2	1426 bp	66.69	4.42	93.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_6341 Species: Bordetella bronchiseptica (50%)	2	1282 bp	65.76	7.02	94.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_7365 Species: Mesorhizobium sp. L48C026A00 (50%)	2	1125 bp	64.44	2.93	86.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_7877 Species: Rhizobium leguminosarum (50%)	2	1066 bp	64.63	4.22	88.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8389 Species: Agrobacterium arsenijevicii (50%)	2	1010 bp	66.24	3.42	99.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_4038 Species: Ochrobactrum intermedium (50%)	2	1869 bp	61.58	5.94	76.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_7110 Species: Agrobacterium tumefaciens (50%)	2	1157 bp	66.72	4.80	88.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_7622 Species: Agrobacterium albertimagni (50%)	2	1095 bp	70.68	2.88	95.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_8134 Species: Mesorhizobium ciceri (50%)	2	1035 bp	66.28	2.46	86.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_6855 Species: Paracoccus aminophilus (50%)	2	1193 bp	63.45	6.04	96.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_7111 Species: Mesorhizobium metallidurans (50%)	2	1157 bp	64.48	4.15	99.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7367 Species: Bosea sp. LC85 (100%)	2	1125 bp	69.96	3.60	88.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8135 Species: Mesorhizobium ciceri (50%)	2	1034 bp	66.54	4.21	98.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_8391 Species: Mesorhizobium sp. LNHC232B00 (50%)	2	1010 bp	66.63	4.46	83.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_3272 Species: Brucella sp. BO2 (50%)	2	2236 bp	67.08	4.76	99.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_3528 Species: Gluconacetobacter sp. SXCC-1 (50%)	2	2072 bp	62.64	4.42	92.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_4040 Species: Hyphomicrobium denitrificans (50%)	2	1868 bp	60.81	7.23	72.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_4808 Species: Mesorhizobium sp. ORS3359 (50%)	2	1614 bp	65.92	4.28	89.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_5064 Species: Granulibacter bethesdensis (50%)	2	1548 bp	58.01	3.10	68.99
Knockout_Variovorax_02_2024_K_none_B1_day_6_5320 Species: Sphingobium lucknowense (100%)	2	1489 bp	57.42	4.43	96.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_7112 Species: Bosea sp. LC85 (50%)	2	1157 bp	67.07	3.89	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7368 Species: Mesorhizobium australicum (50%)	2	1125 bp	64.53	4.00	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_7880 Species: Bosea sp. LC85 (100%)	2	1066 bp	65.76	3.10	98.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_4809 Species: RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated (100%)	2	1614 bp	69.95	5.76	97.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_5833 Species: Ruegeria pomeroyi (50%)	2	1374 bp	62.37	5.24	72.49
Knockout_Variovorax_02_2024_K_none_B1_day_6_6089 Species: Methylophaga aminisulfidivorans (50%)	2	1326 bp	56.86	5.32	98.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7113 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1157 bp	66.38	7.26	88.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_7625 Species: marine sediment metagenome (50%)	2	1094 bp	64.26	4.94	97.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_4298 Species: Mesorhizobium loti (50%)	2	1772 bp	65.69	4.15	85.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_5578 Species: Rhodobacteraceae bacterium PD-2 (50%)	2	1426 bp	67.60	3.68	100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5834 Species: Methylocella silvestris (50%)	2	1374 bp	66.52	4.37	89.96

Displaying items 2251-2300 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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