ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2301-2350 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_6346 Species: Mesorhizobium sp. L103C120A0 (50%)	2	1282 bp	66.46	3.98	83.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_6858 Species: Mesorhizobium sp. L48C026A00 (50%)	2	1192 bp	64.18	3.78	64.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_7370 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (100%)	2	1125 bp	72.98	5.73	97.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_7626 Species: Nitrobacter hamburgensis (50%)	2	1094 bp	65.45	3.02	97.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_7882 Species: Hyphomicrobium denitrificans (100%)	2	1065 bp	65.45	4.79	97.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_8138 Species: Microvirga lotononidis (50%)	2	1034 bp	67.79	5.22	96.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_4299 Species: Bosea sp. LC85 (100%)	2	1771 bp	67.70	4.66	98.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_4555 Species: Bosea sp. LC85 (100%)	2	1677 bp	68.22	3.76	89.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_5835 Species: Mesorhizobium sp. LNHC252B00 (50%)	2	1374 bp	68.34	3.49	100.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_7884 Species: Rhizobium leguminosarum (50%)	2	1065 bp	64.41	3.94	88.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_4045 Species: Aquamicrobium defluvii (50%)	2	1866 bp	61.74	5.39	97.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_5325 Species: Bosea sp. LC85 (100%)	2	1488 bp	66.20	5.14	97.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_5581 Species: Tsukamurella paurometabola (50%)	2	1425 bp	69.19	6.42	89.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_5837 Species: Bosea sp. LC85 (50%)	2	1373 bp	67.52	3.39	86.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_8141 Species: Rhizobium grahamii (50%)	2	1034 bp	64.60	4.06	98.94
Knockout_Variovorax_02_2024_K_none_B1_day_6_2511 Species: Burkholderia sacchari (50%)	2	2828 bp	62.66	5.78	93.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_2767 Species: Mesorhizobium alhagi (50%)	2	2577 bp	64.65	3.84	99.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_4047 Species: Mesorhizobium ciceri (50%)	2	1865 bp	64.56	4.26	98.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_4815 Species: Hoeflea sp. BAL378 (50%)	2	1613 bp	67.70	9.58	98.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_5071 Species: Methylobacterium sp. 4-46 (50%)	2	1546 bp	66.82	4.46	93.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_5583 Species: Clostridium beijerinckii (50%)	2	1424 bp	66.50	6.21	92.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_6863 Species: Comamonadaceae bacterium A1 (50%)	2	1191 bp	66.25	6.05	87.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_7375 Species: Mesorhizobium ciceri (50%)	2	1124 bp	65.12	4.27	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_2768 Species: Brevibacillus borstelensis (50%)	2	2576 bp	63.43	6.11	76.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_5584 Species: Agrobacterium arsenijevicii (50%)	2	1424 bp	57.02	4.74	37.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_6096 Species: Bosea sp. LC85 (50%)	2	1324 bp	73.87	4.76	97.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_6352 Species: Burkholderia sp. CCGE1002 (50%)	2	1280 bp	64.84	3.98	77.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_6864 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1191 bp	68.68	3.78	95.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_7376 Species: Mesorhizobium sp. L103C131B0 (50%)	2	1124 bp	56.41	2.80	87.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_3281 Species: Agrobacterium rhizogenes (50%)	2	2230 bp	59.96	7.53	90.94
Knockout_Variovorax_02_2024_K_none_B1_day_6_6609 Species: Phyllobacterium sp. YR531 (100%)	2	1234 bp	65.48	4.01	99.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7121 Species: Agrobacterium albertimagni (50%)	2	1156 bp	64.10	5.19	97.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_7633 Species: Devosia insulae (50%)	2	1094 bp	68.37	3.98	97.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_7889 Species: Mesorhizobium plurifarium (50%)	2	1064 bp	57.71	4.37	82.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_4306 Species: Caulobacter sp. AP07 (50%)	2	1770 bp	64.18	4.92	81.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_4562 Species: Bosea sp. LC85 (50%)	2	1676 bp	65.63	5.37	91.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_4818 Species: Mesorhizobium sp. ORS3324 (50%)	2	1613 bp	65.72	3.44	78.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_5074 Species: Mesorhizobium sp. LSJC280B00 (50%)	2	1545 bp	63.82	3.98	87.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_5330 Species: Bordetella bronchiseptica (50%)	2	1487 bp	67.79	9.38	100.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5586 Species: RIFCSPLOWO2_02_FULL_NC10_66_22_curated (50%)	2	1424 bp	60.04	4.85	64.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_6098 Species: Mesorhizobium sp. STM 4661 (50%)	2	1324 bp	65.94	4.31	99.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_6610 Species: Pusillimonas sp. T7-7 (50%)	2	1233 bp	66.02	7.54	91.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_7122 Species: Bosea sp. LC85 (50%)	2	1156 bp	66.18	3.50	95.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_8146	2	1033 bp	61.67	3.19	99.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_4307 Species: Alcaligenes faecalis (50%)	2	1770 bp	66.89	4.66	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_6099 Species: Ruegeria pomeroyi (50%)	2	1324 bp	59.74	3.63	79.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_6611 Species: Caenispirillum salinarum (50%)	2	1233 bp	62.04	5.72	96.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_6867 Species: Acetobacteraceae bacterium AT-5844 (50%)	2	1191 bp	64.99	4.53	96.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_7123 Species: Pelagibaca bermudensis (50%)	2	1156 bp	65.31	4.67	68.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_7635 Species: Methylobacterium extorquens (100%)	2	1094 bp	66.09	2.47	98.72

Displaying items 2301-2350 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help