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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 2551-2600 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7415
Species: Mesorhizobium sp. STM 4661 (50%)
2 1120 bp 62.95 3.62 88.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_7671
Species: Mesorhizobium sp. SOD10 (50%)
2 1089 bp 59.04 3.86 66.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_4600
Species: Mesorhizobium huakuii (50%)
2 1666 bp 60.98 3.96 69.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_5368
Species: Mesorhizobium huakuii (50%)
2 1475 bp 64.34 3.25 69.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_6392
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1274 bp 74.96 4.24 99.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_7416
Species: Aquamicrobium defluvii (50%)
2 1119 bp 66.58 4.16 99.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_7928
Species: Ochrobactrum anthropi (50%)
2 1058 bp 58.51 4.40 100.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_8440
Species: Afipia sp. P52-10 (50%)
2 1005 bp 66.27 4.48 95.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_3577
Species: Rhizobium sp. Pop5 (50%)
2 2054 bp 65.68 5.70 97.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_4601
Species: Bosea sp. LC85 (50%)
2 1666 bp 65.97 3.96 86.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_5369
Species: Methylobacterium extorquens (100%)
2 1475 bp 60.88 4.07 93.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_5881
Species: Bradyrhizobium japonicum (50%)
2 1363 bp 53.26 4.40 100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6649
Species: Citreicella sp. SE45 (50%)
2 1226 bp 63.05 3.43 99.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_6905
Species: Mesorhizobium sp. L2C067A000 (50%)
2 1184 bp 65.20 3.67 102.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_3578
Species: Mesorhizobium metallidurans (50%)
2 2054 bp 61.59 4.45 91.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_4858
Species: Bosea sp. LC85 (100%)
2 1599 bp 71.17 4.32 86.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_5370
Species: Bosea sp. LC85 (100%)
2 1475 bp 66.78 4.27 94.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_5626
Species: Pseudomonas bauzanensis (50%)
2 1415 bp 65.94 4.77 93.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_6394
Species: Bosea sp. LC85 (100%)
2 1274 bp 65.86 4.24 89.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_7674
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1089 bp 67.13 3.17 103.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_7930
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1058 bp 60.78 3.40 70.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_8186
Species: Rhizobium sp. R2-400B4 (50%)
2 1029 bp 65.89 3.94 90.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_3835
Species: Rhodomicrobium udaipurense (50%)
2 1952 bp 61.17 5.07 100.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_4347
Species: RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated (50%)
2 1750 bp 61.03 4.63 98.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_5627
Species: Bosea sp. LC85 (50%)
2 1415 bp 63.04 4.98 94.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_5883
Species: Advenella mimigardefordensis (100%)
2 1363 bp 63.17 6.38 95.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_7163
Species: Fulvimarina pelagi (50%)
2 1150 bp 60.26 6.13 95.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_7675
Species: Mesorhizobium plurifarium (50%)
2 1089 bp 62.81 4.13 97.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_8443
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1004 bp 63.55 3.29 114.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_5884
Species: Bosea sp. LC85 (50%)
2 1362 bp 69.46 3.96 85.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_7164
Species: Mesorhizobium opportunistum (50%)
2 1150 bp 64.26 4.43 89.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_4093
Species: Mesorhizobium sp. LSJC280B00 (50%)
2 1845 bp 61.90 4.39 84.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5629
Species: Agrobacterium tumefaciens (50%)
2 1415 bp 65.30 6.68 92.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_6909
Species: RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated (50%)
2 1184 bp 56.84 6.08 91.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_7165
Species: Pusillimonas sp. T7-7 (50%)
2 1150 bp 63.91 3.13 81.65
Knockout_Variovorax_02_2024_K_none_B1_day_6_7933
Species: Brevundimonas diminuta (50%)
2 1057 bp 54.68 3.69 70.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8189
Species: Salipiger mucosus (50%)
2 1028 bp 62.45 4.38 86.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_2302
Species: Brevundimonas sp. KM4 (50%)
2 3064 bp 65.27 6.51 99.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_5374
Species: Agrobacterium albertimagni (50%)
2 1474 bp 64.86 5.70 100.14
Knockout_Variovorax_02_2024_K_none_B1_day_6_5886
Species: Mesorhizobium sp. ORS3359 (100%)
2 1362 bp 66.67 3.52 77.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_7166
Species: Kineosphaera limosa (50%)
2 1150 bp 65.83 3.13 105.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_8190
Species: Microvirga lotononidis (50%)
2 1028 bp 65.56 3.21 94.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_8446
Species: Alcaligenes faecalis (100%)
2 1004 bp 69.42 8.37 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_4351
Species: Salipiger mucosus (50%)
2 1749 bp 62.09 4.46 95.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_4863
Species: Agrobacterium rhizogenes (50%)
2 1597 bp 61.80 4.88 54.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_6143
Species: Brevundimonas diminuta (100%)
2 1315 bp 68.06 2.74 74.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_4352
Species: Hylemonella gracilis (50%)
2 1748 bp 70.37 10.21 89.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5120
Species: Azoarcus sp. KH32C (50%)
2 1533 bp 63.60 4.50 100.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_5376
Species: Paenibacillus durus (50%)
2 1474 bp 65.88 6.00 87.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_5632
Species: Pseudomonas bauzanensis (50%)
2 1414 bp 63.01 5.83 90.38
Displaying items 2551-2600 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.