ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 2601-2650 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_6400 Species: Bosea sp. LC85 (100%)	2	1272 bp	62.19	3.66	90.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7168 Species: Bradyrhizobium sp. ORS 278 (50%)	2	1150 bp	66.78	8.87	98.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_7680 Species: Afipia sp. P52-10 (50%)	2	1088 bp	68.29	4.69	98.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_4097 Species: Sphingomonas sp. MM-1 (50%)	2	1844 bp	63.72	5.78	96.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_7425 Species: Rhodopseudomonas palustris (50%)	2	1118 bp	57.16	4.83	61.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_3842 Species: uncultured bacterium pTW2 (50%)	2	1949 bp	63.78	6.39	94.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_4098 Species: Aquamicrobium defluvii (50%)	2	1843 bp	66.47	4.88	94.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_4354 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (100%)	2	1748 bp	71.51	5.15	95.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_5122 Species: Pseudomonas sp. RIT357 (50%)	2	1532 bp	62.47	7.54	80.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_5378 Species: Mesorhizobium plurifarium (50%)	2	1473 bp	68.43	4.38	94.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_5890 Species: Aquamicrobium defluvii (50%)	2	1361 bp	65.25	6.06	100.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_6146 Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (50%)	2	1313 bp	69.84	5.03	100.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_6914 Species: Ensifer adhaerens (50%)	2	1183 bp	63.74	4.31	81.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_7682 Species: Mesorhizobium sp. LNHC220B00 (50%)	2	1088 bp	63.79	3.45	73.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_8194 Species: Bosea sp. LC85 (50%)	2	1028 bp	63.91	4.38	64.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_3075 Species: Verminephrobacter eiseniae (50%)	2	2352 bp	66.03	4.66	99.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_3587 Species: Devosia sp. DDB001 (50%)	2	2051 bp	64.36	6.22	93.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_3843 Species: Brevundimonas diminuta (100%)	2	1949 bp	65.47	5.46	91.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_4355 Species: Cupriavidus metallidurans (100%)	2	1748 bp	62.99	11.16	74.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_4611 Species: Brevundimonas sp. KM4 (100%)	2	1664 bp	63.04	4.42	100.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_5891 Species: Burkholderia lata (50%)	2	1361 bp	65.54	5.51	90.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6403 Species: Mesorhizobium plurifarium (50%)	2	1271 bp	65.62	4.25	88.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_7939 Species: Granulibacter bethesdensis (50%)	2	1057 bp	65.47	3.41	93.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8195 Species: Delftia sp. RIT313 (50%)	2	1028 bp	64.11	4.67	91.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_6916 Species: Mesorhizobium opportunistum (50%)	2	1183 bp	63.99	4.18	84.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_7684 Species: Sphaerobacter thermophilus (50%)	2	1088 bp	65.99	3.72	99.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_5637 Species: uncultured bacterium (50%)	2	1412 bp	67.56	6.27	99.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_6149 Species: Acidovorax sp. KKS102 (50%)	2	1313 bp	63.82	7.43	90.02
Knockout_Variovorax_02_2024_K_none_B1_day_6_4358 Species: Bosea sp. LC85 (100%)	2	1746 bp	65.52	3.78	99.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_4870 Species: Mesorhizobium plurifarium (50%)	2	1596 bp	64.85	4.32	108.65
Knockout_Variovorax_02_2024_K_none_B1_day_6_7430 Species: Bosea sp. LC85 (50%)	2	1117 bp	67.86	4.03	96.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_8454 Species: Bosea sp. LC85 (100%)	2	1003 bp	70.19	4.79	92.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_3591 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	2049 bp	70.42	5.05	94.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_3847 Species: Rhizobium leguminosarum (50%)	2	1947 bp	59.84	3.93	86.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_4871 Species: Bosea sp. LC85 (100%)	2	1596 bp	64.66	3.95	97.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_6151 Species: Methylobacterium radiotolerans (50%)	2	1313 bp	63.52	5.37	60.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7431 Species: Bosea sp. LC85 (50%)	2	1117 bp	68.22	2.95	98.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7943 Species: Mesorhizobium ciceri (50%)	2	1056 bp	66.86	4.26	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8199 Species: Bosea sp. LC85 (50%)	2	1027 bp	62.61	2.92	78.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_5896 Species: Intrasporangium calvum (50%)	2	1359 bp	63.65	4.64	91.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_6664 Species: Mesorhizobium sp. SOD10 (50%)	2	1224 bp	62.91	4.29	64.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_8200 Species: Mesorhizobium huakuii (50%)	2	1027 bp	63.10	3.80	88.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_6409 Species: Asticcacaulis benevestitus (50%)	2	1270 bp	60.47	3.78	100.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_8201 Species: Burkholderia glumae (50%)	2	1027 bp	66.02	3.51	87.63
Knockout_Variovorax_02_2024_K_none_B1_day_6_8457 Species: Shinella sp. DD12 (50%)	2	1003 bp	61.62	6.28	96.01
Knockout_Variovorax_02_2024_K_none_B1_day_6_4874 Species: Salipiger mucosus (50%)	2	1595 bp	65.52	4.33	81.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_6666 Species: Bosea sp. LC85 (100%)	2	1224 bp	70.10	3.80	88.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_7946 Species: Mesorhizobium alhagi (50%)	2	1056 bp	67.80	3.69	90.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_8458 Species: Bosea sp. LC85 (100%)	2	1003 bp	67.20	4.19	99.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_4619 Species: Mesorhizobium sp. LNHC229A00 (50%)	2	1662 bp	66.31	4.42	93.14

Displaying items 2601-2650 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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