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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 3101-3150 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_3397
Order: Rhizobiales (66.67%)
3 2148 bp 64.94 3.56 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_5588 3 1424 bp 66.15 4.95 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_2025
Species: BJP_08E140C01_10KDA_Methylophilales_47_88 (50%)
4 3515 bp 53.77 6.10 100.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_8106
Species: Ensifer adhaerens (100%)
2 1038 bp 66.09 3.47 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_5795
Species: Bosea sp. LC85 (100%)
3 1382 bp 68.89 4.12 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_8235
Species: RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated (50%)
2 1023 bp 62.76 5.72 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_8242
Species: Aquamicrobium defluvii (50%)
2 1023 bp 66.57 2.93 100.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_5901
Species: Mesorhizobium sp. SOD10 (50%)
2 1358 bp 67.23 4.20 100.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_8369
Species: Mesorhizobium sp. LNJC399B00 (50%)
2 1011 bp 68.05 3.71 100.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_6146
Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (50%)
2 1313 bp 69.84 5.03 100.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_1932
Species: Skermanella stibiiresistens (100%)
4 3696 bp 67.37 5.32 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6783
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated (100%)
2 1205 bp 67.88 4.23 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6800
Species: Paracoccus aminophilus (100%)
2 1202 bp 65.47 5.12 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6851
Species: Mesorhizobium sp. L2C084A000 (100%)
2 1193 bp 64.71 3.77 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_6927
Genus: Mesorhizobium (100%)
3 1181 bp 64.94 4.06 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_1879
Order: Rhizobiales (66.67%)
6 3800 bp 59.39 5.25 100.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_7252
Species: Ochrobactrum anthropi (50%)
2 1139 bp 70.32 4.35 100.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_4529
Species: uncultured bacterium lac153 (66.67%)
3 1686 bp 72.24 5.87 100.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_2905
Domain: Bacteria (66.67%)
3 2478 bp 66.79 4.24 100.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_3910
Class: Gammaproteobacteria (66.67%)
3 1919 bp 68.26 7.50 100.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7873
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1067 bp 67.76 4.22 100.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7887
Class: Gammaproteobacteria (66.67%)
3 1064 bp 71.90 3.38 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7987
Species: Octadecabacter arcticus (100%)
2 1052 bp 65.87 3.56 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_8030
Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (100%)
2 1046 bp 67.50 4.02 100.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_8346
Species: Klebsiella pneumoniae (50%)
2 1013 bp 56.66 2.81 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8446
Species: Alcaligenes faecalis (100%)
2 1004 bp 69.42 8.37 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_8477
Species: Alicycliphilus denitrificans (50%)
2 1001 bp 71.53 8.24 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_5297
Order: Rhizobiales (66.67%)
3 1494 bp 71.08 5.82 100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_6937
Order: Rhizobiales (66.67%)
3 1180 bp 63.31 3.31 100.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_4830
Species: Agrobacterium tumefaciens (66.67%)
3 1610 bp 65.40 4.84 100.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_4180
Phylum: Proteobacteria (66.67%)
3 1813 bp 66.74 5.96 100.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_2941
Class: Betaproteobacteria (66.67%)
3 2455 bp 62.20 5.68 100.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_7735
Species: Bosea sp. LC85 (100%)
2 1081 bp 71.32 4.72 100.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_7790
Phylum: Proteobacteria (66.67%)
3 1075 bp 67.26 3.63 100.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_7964
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1054 bp 72.30 4.27 100.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_2618
Species: Pseudomonas bauzanensis (50%)
2 2720 bp 70.22 5.46 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_8065
Species: Mesorhizobium sp. LSJC269B00 (50%)
2 1042 bp 66.41 3.60 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_6521
Species: Bosea sp. LC85 (100%)
3 1248 bp 68.51 4.09 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_5485
Species: Mesorhizobium huakuii (50%)
2 1445 bp 69.07 3.84 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_4822
Genus: Mesorhizobium (100%)
3 1612 bp 68.42 3.91 100.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_2373
Species: Sphingobium chinhatense (50%)
2 2964 bp 58.84 4.15 100.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_2887
Species: Pseudogulbenkiania ferrooxidans (50%)
2 2495 bp 66.53 8.06 100.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_7321
Order: Rhodobacterales (100%)
3 1131 bp 70.56 4.64 100.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_6228
Species: Desulfotomaculum reducens (50%)
2 1301 bp 64.87 4.15 100.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_7520
Species: Bosea sp. LC85 (66.67%)
3 1107 bp 63.14 4.47 100.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_7771 5 1077 bp 50.42 2.23 100.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_7807
Species: Novosphingobium resinovorum (66.67%)
3 1074 bp 64.53 2.37 100.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_3852
Species: Azotobacter vinelandii (50%)
2 1945 bp 67.30 5.09 100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7944
Genus: Rhizobium (100%)
3 1056 bp 65.06 4.83 100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7969
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1053 bp 67.33 3.99 100.57
Displaying items 3101-3150 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.