Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ECF subfamily RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
27.7 | 173.0 | 86 | 7.40e-15 | det:DET1348 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=20 to=178 evalue=7.0e-29 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 7.00e-29 | det:DET1348 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=14 to=87 evalue=2.1e-13 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.10e-13 | det:DET1348 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=110 to=180 evalue=6.8e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 6.80e-13 | det:DET1348 |
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=123 to=174 evalue=8.3e-13 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.30e-13 | det:DET1348 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=17 to=89 evalue=3.2e-08) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.20e-08 | det:DET1348 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=26 to=89 evalue=2.4e-06 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.40e-06 | det:DET1348 |
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=ACD76_111153.6822.16G0002,ACD76_111153.6822.16_2,ACD76_C00024G00002 id=120377 tax=ACD76 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OD1, not OD1-i organism_desc=OD1 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 379 | 6.10e-103 | det:DET1348 |
Uncharacterized protein {ECO:0000313|EMBL:EKD33531.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
100.0 | 193.0 | 379 | 2.10e-102 | K1Y8H1_9BACT |