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NECEvent2014_2_3_scaffold_93

Alias: 172_003_scaffold_93

Search features with annotation key words

Displaying items 31-44 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_93_31
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31192..32073)
DNA (882bp) protein (294aa)
Uncharacterized protein n=204 Tax=Clostridium difficile RepID=C9XMV8_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE05830.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_93_32
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32077..32907)
DNA (831bp) protein (277aa)
dapF; Diaminopimelate epimerase (DAP epimerase) (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:000
Diaminopimelate epimerase n=132 Tax=Clostridium difficile RepID=T3GHQ0_CLODC rbh
NECEvent2014_2_3_scaffold_93_33
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33194..34228)
DNA (1035bp) protein (345aa)
Low specificity L-threonine aldolase {ECO:0000313|EMBL:CCL22949.1}; EC=4.1.2.5 {ECO:0000313|EMBL:CCL22949.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
L-allo-threonine aldolase n=58 Tax=Clostridium difficile RepID=T3GIA0_CLODC rbh
ltaE; low-specificity L-threonine aldolase
NECEvent2014_2_3_scaffold_93_34
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34524..36299
DNA (1776bp) protein (592aa)
Fibronectin-binding A family protein n=54 Tax=Clostridium difficile RepID=T3GHN8_CLODC rbh
Fibronectin-binding A family protein {ECO:0000313|EMBL:EQG75711.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
fbpA; fibronectin-binding protein
NECEvent2014_2_3_scaffold_93_35
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36514..38166)
DNA (1653bp) protein (551aa)
ABC-type transportsystem,pristinamycin/multidrug-family ATP-binding protein (EC:3.6.3.-)
ABC-type transport system,pristinamycin/multidrug-family ATP-binding protein {ECO:0000313|EMBL:CAJ69483.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ69483.1};; TaxID=272563 species="Bacteria; Firmicutes; Clost
ABC transporter family protein n=26 Tax=Clostridium difficile RepID=T3GI83_CLODC rbh
NECEvent2014_2_3_scaffold_93_36
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38465..39676)
DNA (1212bp) protein (404aa)
Uracil-xanthine permease family protein n=138 Tax=Clostridium difficile RepID=T3GFU6_CLODC rbh
uraA; ABC-type transport system, uracil-specificpermease
ABC-type transport system, uracil-specificpermease {ECO:0000313|EMBL:CEJ99221.1}; Uracil permease {ECO:0000313|EMBL:CKH38098.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
NECEvent2014_2_3_scaffold_93_37
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39960..40493)
DNA (534bp) protein (178aa)
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=213 Tax=Clostridium difficile RepID=PYRR_CLOD6 rbh
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_93_38
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40853..41800)
DNA (948bp) protein (316aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pept
Pseudouridine synthase n=1 Tax=Clostridium difficile CD69 RepID=T3A1H9_CLODI rbh
pseudouridylate synthase
NECEvent2014_2_3_scaffold_93_39
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41769..42215)
DNA (447bp) protein (149aa)
lspA; Lipoprotein signal peptidase (Prolipoproteinsignal peptidase) (Signal peptidase II) (SPase II) (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=98 Tax=Clostridium difficile RepID=LSPA_CLOD6
NECEvent2014_2_3_scaffold_93_40
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42525..43304)
DNA (780bp) protein (260aa)
Polysaccharide deacetylase family protein n=116 Tax=Clostridium difficile RepID=T3GH46_CLODC rbh
Putative oligosaccharide deacetylase {ECO:0000313|EMBL:CCL22956.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
putative oligosaccharide deacetylase
NECEvent2014_2_3_scaffold_93_41
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43359..43841)
DNA (483bp) protein (161aa)
Prokaryotic dksA/traR C4-type zinc finger family protein n=174 Tax=Clostridium difficile RepID=T3GHP7_CLODC rbh
putative transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EHJ24702.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_93_42
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44107..45528)
DNA (1422bp) protein (474aa)
Carbon starvation CstA family protein n=31 Tax=Clostridium difficile RepID=T3GHP0_CLODC rbh
Carbon starvation protein, CstA {ECO:0000313|EMBL:CCL22958.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
cstA; Carbon starvation protein, CstA
NECEvent2014_2_3_scaffold_93_43
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45674..46444)
DNA (771bp) protein (257aa)
Response regulator n=102 Tax=Clostridium difficile RepID=T3GF99_CLODC rbh
two-component response regulator
Response regulator {ECO:0000313|EMBL:EQG75541.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_93_44
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(46449..47651)
DNA (1203bp) protein (401aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=170 Tax=Clostridium difficile RepID=T3GDN3_CLODC rbh
Two-component sensor histidine kinase
Two-component sensor histidine kinase {ECO:0000313|EMBL:CEJ99229.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
Displaying items 31-44 of 44 in total

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