ggKbase home page

NECEvent2014_2_3_scaffold_216

Alias: 172_003_scaffold_216

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_216_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

375..1910
DNA (1536bp) protein (512aa)
Substrate binding domain of ABC-type glycine betaine transport system family protein n=23 Tax=Clostridium difficile RepID=T3G5F2_CLODC rbh
ABC-type transport system, glycinebetaine/carnitine/choline permease
ABC-type transport system, glycinebetaine/carnitine/choline permease {ECO:0000313|EMBL:CEJ99867.1}; Osmoprotectant ABC transporter substrate-binding/permease protein {ECO:0000313|EMBL:CKG80109.1}; Tax
NECEvent2014_2_3_scaffold_216_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1926..2687
DNA (762bp) protein (254aa)
ABC-type transport system, glycine betaine/carnitine/choline ATP-binding protein {ECO:0000313|EMBL:CCL31485.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL31485.1};; TaxID=1215069 species="Bacteria; Firmicutes;
ABC transporter family protein n=183 Tax=Clostridium difficile RepID=C9XRG3_CLODC rbh
glycine/betaine ABC transporter ATP-binding protein
NECEvent2014_2_3_scaffold_216_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3025..3894
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=163 Tax=Clostridium difficile RepID=T3G297_CLODC rbh
Transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CAJ70111.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_216_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4223..4474
DNA (252bp) protein (84aa)
Uncharacterized protein n=198 Tax=Clostridium difficile RepID=C9XRG1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE59606.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_216_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4586..5365
DNA (780bp) protein (260aa)
Methyltransferase domain protein n=139 Tax=Clostridium difficile RepID=T3G6E1_CLODC rbh
conserved hypothetical protein
Methyltransferase domain protein {ECO:0000313|EMBL:EQG73913.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_216_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5500..6150)
DNA (651bp) protein (217aa)
NADPH-dependent FMN reductase family protein n=25 Tax=Clostridium difficile RepID=T3G5E8_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70108.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_216_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6147..6650)
DNA (504bp) protein (168aa)
Uncharacterized protein n=55 Tax=Clostridium difficile RepID=Q17ZV6_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70107.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_216_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6699..7214)
DNA (516bp) protein (172aa)
Transcriptional regulator PadR-like family protein n=91 Tax=Clostridium difficile RepID=T3G291_CLODC rbh
Transcriptional regulator, PadR family
PadR family transcriptional regulator {ECO:0000313|EMBL:CKG80358.1}; Transcriptional regulator, PadR family {ECO:0000313|EMBL:CDT49869.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_216_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7494..8021
DNA (528bp) protein (176aa)
Transcriptional regulator, MarR family n=58 Tax=Clostridium difficile RepID=D5Q7S9_CLODI rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCK95726.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
MarR family transcriptional regulator
NECEvent2014_2_3_scaffold_216_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8005..9408
DNA (1404bp) protein (468aa)
MATE efflux family protein n=81 Tax=Clostridium difficile RepID=T3G5F8_CLODC rbh
MATE efflux family protein {ECO:0000313|EMBL:EQE59559.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
Na+ driven multidrug efflux pump
NECEvent2014_2_3_scaffold_216_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9972..10283)
DNA (312bp) protein (104aa)
Uncharacterized protein n=102 Tax=Clostridium difficile RepID=G6BQN7_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCL23654.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_216_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10339..10932)
DNA (594bp) protein (198aa)
Nitroreductase family protein n=176 Tax=Clostridium difficile RepID=C9XRF4_CLODC rbh
nitroreductase
Nitroreductase family protein {ECO:0000313|EMBL:EQE59590.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_216_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11496..11726
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI00016C5F07
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG80486.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
NECEvent2014_2_3_scaffold_216_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11783..12433
DNA (651bp) protein (217aa)
Membrane insertase, YidC/Oxa1 family domain protein n=69 Tax=Clostridium difficile RepID=T3G1J3_CLODC rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ70101.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_216_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12636..13307
DNA (672bp) protein (224aa)
Response regulator n=64 Tax=Clostridium difficile RepID=T3G2B9_CLODC rbh
Two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ70100.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_216_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13304..14434
DNA (1131bp) protein (377aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
HAMP domain protein n=50 Tax=Clostridium difficile RepID=T3G432_CLODC rbh
Two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_216_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14733..14855
DNA (123bp) protein (41aa)
Uncharacterized protein n=73 Tax=Clostridium difficile RepID=G6BQN2_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73795.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_216_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14852..15697
DNA (846bp) protein (282aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKG80632.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKG80632.1};; ABC-type transport system, multidrug-familyATP-binding protein {ECO:0000313|EMBL:CEJ99852.
ABC transporter family protein n=6 Tax=Clostridium difficile RepID=T3G5H0_CLODC rbh
NECEvent2014_2_3_scaffold_216_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15697..16725
DNA (1029bp) protein (343aa)
ABC-type transport system, multidrug-family permease n=118 Tax=Clostridium difficile RepID=Q17ZU5_CLOD6 rbh
ABC-type transport system, multidrug-familypermease
ABC transporter permease {ECO:0000313|EMBL:CKG80662.1}; ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CDT55729.1}; ABC-type transport system, multidrug-familypermease {ECO:000
NECEvent2014_2_3_scaffold_216_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16728..17741
DNA (1014bp) protein (338aa)
ABC-2 transporter family protein n=11 Tax=Clostridium difficile RepID=T3G2B3_CLODC rbh
ABC-type transport system, multidrug-familypermease
ABC transporter permease {ECO:0000313|EMBL:CKG80685.1}; ABC-type transport system, multidrug-familypermease {ECO:0000313|EMBL:CEJ99850.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_216_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18258..19508)
DNA (1251bp) protein (417aa)
Major Facilitator Superfamily protein n=189 Tax=Clostridium difficile RepID=T3G428_CLODC rbh
cme; Multidrug resistance protein Cme;Transporter,Major Facilitator Superfamily (MFS)
Multidrug resistance protein Cme Transporter,Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CAJ70095.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
NECEvent2014_2_3_scaffold_216_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19594..20340)
DNA (747bp) protein (249aa)
MerR regulatory family protein n=136 Tax=Clostridium difficile RepID=C9XRE6_CLODC rbh
MerR family transcriptional regulator
MerR regulatory family protein {ECO:0000313|EMBL:EQG73841.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_216_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20493..21515)
DNA (1023bp) protein (341aa)
Beta-lactamase family protein n=86 Tax=Clostridium difficile RepID=T3G5G3_CLODC rbh
Putative penicillin-binding protein {ECO:0000313|EMBL:CCL23606.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
penicillin-binding protein
NECEvent2014_2_3_scaffold_216_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21515..23935)
DNA (2421bp) protein (807aa)
Excinuclease ABC subunit A n=77 Tax=Clostridium difficile RepID=T3G1I0_CLODC rbh
putative UvrABC system protein A 2 (UvrA protein2) (Excinuclease ABC subunit A 2)
Putative UvrABC system protein A 2 (UvrA protein 2) (Excinuclease ABC subunit A 2) {ECO:0000313|EMBL:CAJ70092.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococ
NECEvent2014_2_3_scaffold_216_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24021..24941)
DNA (921bp) protein (307aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=182 Tax=Clostridium difficile RepID=T3G2A8_CLODC rbh
Transcriptional regulator, AraC family
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQG73888.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
Displaying 25 items

View Taxonomy