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NECEvent2014_2_3_scaffold_314_11

Organism: NECEvent2014_2_3_Peptoclostridium_difficile_28_21

near complete RP 49 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: 10180..13665

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2292
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2292
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=136 Tax=Clostridium difficile RepID=RPOC_CLOD6 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2294
  • Evalue 0.0
  • rbh

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Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3486
TTGTTTGAATTAAACAATTTCGAGTCGATAAAAATAGCATTGGCTTCTCCAGAAAAAATAAGACAATGGTCTAGGGGAGAAGTTAAAAAGCCAGAAACTATAAATTACCGTACTTTAAAACCAGAAAAAGATGGTCTTTTCTGTGAAAGAATATTTGGACCACAAAAAGACTGGGAGTGCCACTGTGGTAAATATAGAAGAGTTAGATATAAAGGTGTAGTTTGTGATAGATGTGGAGTAGAAGTAACTAAATCAAAAGTAAGAAGAGAGAGAATGGGACATATAGAGCTAGCTGCTCCTATGTCTCACATCTGGTACTTCAAAGGTATACCAAGTAGAATGGGACTTTTACTTGATATGTCACCAAGATCGTTAGAAAAAATATTATACTTTGCCTCATATGTGGTAGTTGATCCAGGAGAGACTGGATTAAACGAAAAACAATTGCTTACAGAAAAAGAATACAGAACTGCTCTTGAAAAGTATGGATATACTTTTACTGTAGGAATGGGTGCTGAAGCTGTAAAGACATTACTACAAAATATAGATTTAGAGCAACAAAGTAAAGACCTAAGAGCGGAGTTAAAAGATAGTACAGGGCAAAAGAAAGTTAGAACAATAAGAAGATTAGAAGTTGTAGAGGCATTTAAAAAGTCTGGAAATAAACCAGAATGGATGATTTTAGATGCAATACCAGTAATACCACCAGATTTAAGACCAATGGTACAACTTGATGGTGGAAGATTTGCGACTTCAGACCTAAATGATTTATATAGAAGAGTTATAAATAGAAACAATAGACTTAAAAGATTATTAGAGCTTGGAGCTCCAGATATAATTGTAAGAAATGAAAAAAGAATGCTTCAAGAAGCTGTTGATGCATTGATAGATAATGGTAGAAGAGGTAGACCTGTAACAGGACCTGGAAATAGACCACTTAAATCTTTATCAGATATGTTAAAAGGTAAGCAAGGTCGTTTCCGTCAAAACTTACTTGGTAAGCGTGTTGACTACTCAGGACGTTCTGTTATAGTTGTTGGACCAGAACTTAAATTTTATCAATGTGGACTTCCAAAGAAGATGGCATTAGAATTATTCAAGCCATTTGTTATGGATAAATTAGTTAAAGAAGGTTATGCACATAATATAAAAAGTGCGAAATCTATAGTAGAAAAAGTTAAGCCAGAAGTTTGGGATGTTTTAGAAGATGTTATAAAAAGTCATCCAGTTCTTCTTAACCGTGCACCGACTCTACATAGATTAGGTATACAAGCATTTGAACCAATCTTAGTTGAAGGTAAGGCTATAAAACTACATCCTCTTGTATGTACAGCTTATAATGCAGACTTTGATGGTGACCAAATGGCAGTCCATGTACCTTTATCAGTAGAAGCACAAGCAGAAGCAAGATTCTTAATGCTTTCTGTAAATAATATACTTGCTCCTAAAGATGGTTCACCTATAACTACTCCATCTCAGGATATGGTTTTAGGTTGCTATTATCTAACAATAGAAGCCCAAGATGGAGCTAAAGGAACAGGTATGGTATTTAAAGACTTTAATGAACTATTACTTGCTTATTACAATAAATCAGTTCATCTACATGCATTAGTGAAACTGAAGGTAACACTTGAAGATGGAAGAAGTTCATTGGTTGAAAGTACTGTTGGTAGATTTATATTTAATGAAAATATACCTCAAGACTTAGGTTTTGTAGATAGAAAAGAAAATCCATTTGCACTTGAAGTTGATTTCTTAGCAGATAAAAAATCTCTTGGTAAAATAATAGATAAATGCTTTAGAAAACACGGAAATACAGAAACAGCTGAATTACTAGATTATATAAAAGCTCTAGGATTTAAATATTCTACATTAGGTGGTATAACAGTTGCTGTTGATGATATGAGTGTCCCAGAAGAAAAGAAAGTATTTATAGCTGAGGCAGAAGCTAAAGTTGATAAGTATGAAAAAGCATACAGAAGAGGTCTAATCTCTGATGAAGAAAGATATGAAAAAGTTATAGAGACATGGACAGAAACAACTGATAAAGTTACTGATGCTCTTATGGGTGGACTAGATAGATTAAATAATATATATATAATGGCACATTCAGGAGCCAGAGGTTCTAAAAACCAAATTAGACAGCTGGCAGGTATGCGTGGTCTTATGGCAAATGCATCTGGTAAAACAGTTGAGATACCAGTTAAATCTAATTTCCGTGAAGGTTTATCAGTACTAGAATACTTTACATCTTCACATGGAGCCAGAAAAGGTCTTGCCGATACAGCTATACGTACAGCTGAATCTGGATATTTAACAAGAAGACTTGTTGATGTAAGTCAAGATGTTATTGTAAGGGAAATAGATTGTGGAACAGAAGATACTACAGAGATTTATGCTATAAAAGAAGGAAATGAAGTTATAGAAGAGATATATGATAGAATTGTAGGAAGATATACTATAGACCCTATATTAAATCCTGAAACTGGAGAAGTTATAGTTGAGGCTGATTCAATGATACAAGAAGATGAAGCAGAAACTATAGTAGCTTTAGGAATTGAAAAAATTAGGATAAGAACAGTTCTTAACTGTAAAACTAATCATGGAGTTTGTTCTAAGTGTTATGGTAGAAACTTGGCAACAGGAAAAGAAGTTAATATAGGTGAAGCAGTTGGTATAATAGCAGCTCAATCTATCGGTGAGCCGGGTACTCAGCTTACAATGCGTACATTCCATACTGGAGGAGTTGCAGGAGCTGATATAACTCAAGGTCTACCAAGGGTTGAAGAATTATTTGAAGCTAGAAAACCAAAAGGATTAGCTGTAATAACTGAAGTATCTGGTAGAGTTGAAATTGATGAAACAGGAAAGAGAAAAGAAGTAAATGTAATACCAGAAGAAGGCGAGACTCAAACATATGTAATTCCATATGGTTCTAGATTAAAAGTTAAGCAAGGTCAAATGCTAGAGGCTGGAGACCCTCTAACACAAGGATTTATAAATCCTCATGATATAGTAAGAGTAAATGGTGTTAAGGGAGTTCAAGAATATATAGTTAAAGAAGTTCAAAGAGTGTATAGACTTCAAGGGGTTGACGTTAATGATAAGCATATAGAAGTTATAGTAAGACAAATGCTATCTAAAGTAAAAGTTGAAGACCCAGGAGATACAGATTTATTGCCAGGTGGATATGAAGATGTATTAACATTCAATGAATGTAATAAAGATGCTATAGATAAAGGTCTAAGACCAGCAGTTGCTAAAAGAGTTTTACTTGGTATAACTAAAGCATCTCTTGCAACTGATTCATTCTTATCAGCAGCTTCTTTCCAAGAAACAACAAGAGTATTAACAGAGGCAGCAATAAAAGGTAAAGAAGACCACTTAATAGGACTTAAAGAAAATGTTATATTAGGTAAGTTAATACCAGCAGGAACAGGAATGAAGAAATATAGAAATATAGCTGTTGAAAAAATTGAAGATTAA
PROTEIN sequence
Length: 1162
LFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWECHCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDMSPRSLEKILYFASYVVVDPGETGLNEKQLLTEKEYRTALEKYGYTFTVGMGAEAVKTLLQNIDLEQQSKDLRAELKDSTGQKKVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKKMALELFKPFVMDKLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNILAPKDGSPITTPSQDMVLGCYYLTIEAQDGAKGTGMVFKDFNELLLAYYNKSVHLHALVKLKVTLEDGRSSLVESTVGRFIFNENIPQDLGFVDRKENPFALEVDFLADKKSLGKIIDKCFRKHGNTETAELLDYIKALGFKYSTLGGITVAVDDMSVPEEKKVFIAEAEAKVDKYEKAYRRGLISDEERYEKVIETWTETTDKVTDALMGGLDRLNNIYIMAHSGARGSKNQIRQLAGMRGLMANASGKTVEIPVKSNFREGLSVLEYFTSSHGARKGLADTAIRTAESGYLTRRLVDVSQDVIVREIDCGTEDTTEIYAIKEGNEVIEEIYDRIVGRYTIDPILNPETGEVIVEADSMIQEDEAETIVALGIEKIRIRTVLNCKTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVITEVSGRVEIDETGKRKEVNVIPEEGETQTYVIPYGSRLKVKQGQMLEAGDPLTQGFINPHDIVRVNGVKGVQEYIVKEVQRVYRLQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNECNKDAIDKGLRPAVAKRVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGKLIPAGTGMKKYRNIAVEKIED*