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NECEvent2014_3_3_UNK

In projects: NECEvent2014_3_3

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 13.99 Longest contig: 11.31 Kbp Bin length: 984.28 Kbp GC content: 34.56 %
Contigs count: 363 Features count: 1151 rRNAs count: 3 tRNAs count: 19

Genome completeness

partial RP 1 / 55 BSCG 1 / 51 ASCG 3 / 38 MC: 2
Displaying items 201-250 of 363 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_2670 173_001_scaffold_2670
Species: Clostridium ultunense (50%)
2 2013 bp 28.46 8.64 97.76
NECEvent2014_3_3_scaffold_4911 173_001_scaffold_4911
Species: Klebsiella pneumoniae (50%)
2 1035 bp 52.46 5.51 96.81
NECEvent2014_3_3_scaffold_4912 173_001_scaffold_4912
Species: Enterobacter aerogenes (100%)
2 1034 bp 54.16 5.66 66.44
NECEvent2014_3_3_scaffold_1904 173_001_scaffold_1904
Species: Peptococcaceae bacterium BRH_c23 (50%)
2 2785 bp 30.77 9.21 92.53
NECEvent2014_3_3_scaffold_4658 173_001_scaffold_4658
Species: Enterobacter aerogenes (50%)
2 1107 bp 51.40 4.07 70.46
NECEvent2014_3_3_scaffold_3960 173_001_scaffold_3960
Species: Acetobacterium woodii (50%)
2 1332 bp 28.08 8.33 98.65
NECEvent2014_3_3_scaffold_2938 173_001_scaffold_2938
Species: Clostridium argentinense (50%)
2 1829 bp 30.45 9.51 80.70
NECEvent2014_3_3_scaffold_4411 173_001_scaffold_4411
Species: [Clostridium] clariflavum (50%)
2 1186 bp 27.66 7.34 72.85
NECEvent2014_3_3_scaffold_4927 173_001_scaffold_4927
Species: Citrobacter youngae (50%)
2 1030 bp 48.83 6.12 26.70
NECEvent2014_3_3_scaffold_4416 173_001_scaffold_4416
Species: GWB1_Spirochaetes_36_13_curated (50%)
2 1184 bp 31.33 7.47 83.87
NECEvent2014_3_3_scaffold_2689 173_001_scaffold_2689
Species: Treponema medium (50%)
2 2005 bp 33.77 19.08 94.71
NECEvent2014_3_3_scaffold_2945 173_001_scaffold_2945
Species: Enterobacter aerogenes (100%)
2 1826 bp 66.16 26.78 99.07
NECEvent2014_3_3_scaffold_1923 173_001_scaffold_1923
Species: Dialister succinatiphilus (50%)
2 2761 bp 26.22 7.50 100.40
NECEvent2014_3_3_scaffold_3971 173_001_scaffold_3971
Species: Clostridium sp. CAG:678 (50%)
2 1325 bp 27.55 7.25 63.17
NECEvent2014_3_3_scaffold_4421 173_001_scaffold_4421
Species: Methanoplanus limicola (50%)
2 1183 bp 28.74 7.61 96.11
NECEvent2014_3_3_scaffold_3461 173_001_scaffold_3461
Species: [Clostridium] saccharolyticum (50%)
2 1546 bp 36.87 9.31 89.84
NECEvent2014_3_3_scaffold_1926 173_001_scaffold_1926
Species: [Clostridium] sordellii (50%)
2 2757 bp 25.10 5.66 91.84
NECEvent2014_3_3_scaffold_2186 173_001_scaffold_2186
Species: Peptoniphilus sp. oral taxon 386 (50%)
2 2441 bp 35.89 10.57 99.43
NECEvent2014_3_3_scaffold_3466 173_001_scaffold_3466
Species: Clostridium ultunense (50%)
2 1542 bp 25.10 5.64 99.61
NECEvent2014_3_3_scaffold_3212 173_001_scaffold_3212
Species: [Clostridium] papyrosolvens (100%)
2 1670 bp 27.84 7.01 98.44
NECEvent2014_3_3_scaffold_1168 173_001_scaffold_1168
Species: Clostridium sp. HMP27 (50%)
2 4495 bp 32.57 10.01 86.50
NECEvent2014_3_3_scaffold_2704 173_001_scaffold_2704
Species: Klebsiella oxytoca (50%)
2 1996 bp 51.15 98.00 96.49
NECEvent2014_3_3_scaffold_3730 173_001_scaffold_3730
Species: Streptococcus anginosus (50%)
2 1429 bp 29.32 8.50 93.70
NECEvent2014_3_3_scaffold_3733 173_001_scaffold_3733
Species: Alkaliphilus metalliredigens (50%)
2 1426 bp 28.26 6.10 70.48
NECEvent2014_3_3_scaffold_3485 173_001_scaffold_3485
Species: Clostridium kluyveri (50%)
2 1531 bp 34.88 37.82 83.67
NECEvent2014_3_3_scaffold_4190 173_001_scaffold_4190
Species: Klebsiella oxytoca (100%)
2 1247 bp 67.36 131.96 98.64
NECEvent2014_3_3_scaffold_3231 173_001_scaffold_3231
Species: Alkaliphilus oremlandii (50%)
2 1661 bp 33.90 7.59 82.18
NECEvent2014_3_3_scaffold_2977 173_001_scaffold_2977
Species: Enterobacter aerogenes (100%)
2 1805 bp 57.84 4.57 82.11
NECEvent2014_3_3_scaffold_5003 173_001_scaffold_5003
Species: Escherichia coli (50%)
2 1012 bp 51.38 4.74 79.45
NECEvent2014_3_3_scaffold_4197 173_001_scaffold_4197
Species: Salmonella enterica (50%)
2 1245 bp 50.68 4.82 67.47
NECEvent2014_3_3_scaffold_4198 173_001_scaffold_4198
Species: Escherichia coli (50%)
2 1245 bp 53.82 7.95 92.05
NECEvent2014_3_3_scaffold_4456 173_001_scaffold_4456
Species: Alkaliphilus metalliredigens (50%)
2 1171 bp 31.51 7.81 94.02
NECEvent2014_3_3_scaffold_1963 173_001_scaffold_1963
Species: Eubacterium plexicaudatum (50%)
2 2701 bp 30.43 8.00 97.63
NECEvent2014_3_3_scaffold_2225 173_001_scaffold_2225
Species: Alkaliphilus metalliredigens (100%)
2 2398 bp 34.70 8.82 98.21
NECEvent2014_3_3_scaffold_3249 173_001_scaffold_3249
Species: Viridibacillus arenosi (50%)
2 1652 bp 30.75 8.99 69.55
NECEvent2014_3_3_scaffold_2229 173_001_scaffold_2229
Species: GWB2_Clostridiales_37_7_curated (100%)
2 2393 bp 28.29 9.28 93.40
NECEvent2014_3_3_scaffold_4215 173_001_scaffold_4215
Species: Salmonella enterica (50%)
2 1240 bp 53.39 4.60 73.31
NECEvent2014_3_3_scaffold_2999 173_001_scaffold_2999
Species: Alkaliphilus oremlandii (100%)
2 1792 bp 33.15 8.37 97.77
NECEvent2014_3_3_scaffold_3767 173_001_scaffold_3767
Species: Clostridium ultunense (50%)
2 1408 bp 28.27 7.03 92.90
NECEvent2014_3_3_scaffold_3512 173_001_scaffold_3512
Species: Escherichia coli (50%)
2 1517 bp 52.67 108.67 94.92
NECEvent2014_3_3_scaffold_1977 173_001_scaffold_1977
Species: Streptococcus anginosus (50%)
2 2666 bp 49.17 190.51 9.15
NECEvent2014_3_3_scaffold_2747 173_001_scaffold_2747
Species: Bacillus sp. X1(2014) (50%)
2 1954 bp 31.93 7.22 93.19
NECEvent2014_3_3_scaffold_3003 173_001_scaffold_3003
Species: [Clostridium] papyrosolvens (50%)
2 1790 bp 26.93 6.20 93.02
NECEvent2014_3_3_scaffold_4222 173_001_scaffold_4222
Species: Enterobacter aerogenes (100%)
2 1239 bp 56.82 3.87 100.48
NECEvent2014_3_3_scaffold_3774 173_001_scaffold_3774
Species: Caldisalinibacter kiritimatiensis (50%)
2 1404 bp 35.75 8.55 93.38
NECEvent2014_3_3_scaffold_4735 173_001_scaffold_4735 2 1082 bp 25.69 3.88 26.06
NECEvent2014_3_3_scaffold_1727 173_001_scaffold_1727
Species: Acetobacterium woodii (50%)
2 3102 bp 32.85 8.61 79.69
NECEvent2014_3_3_scaffold_3270 173_001_scaffold_3270
Species: Klebsiella pneumoniae (100%)
2 1641 bp 51.31 5.03 88.67
NECEvent2014_3_3_scaffold_3017 173_001_scaffold_3017 2 1780 bp 31.07 7.75 28.15
NECEvent2014_3_3_scaffold_3530 173_001_scaffold_3530
Species: Paenibacillus durus (50%)
2 1511 bp 33.22 10.32 82.99
Displaying items 201-250 of 363 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.