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NECEvent2014_3_3_UNK

In projects: NECEvent2014_3_3

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 13.99 Longest contig: 11.31 Kbp Bin length: 984.28 Kbp GC content: 34.56 %
Contigs count: 363 Features count: 1151 rRNAs count: 3 tRNAs count: 19

Genome completeness

partial RP 1 / 55 BSCG 1 / 51 ASCG 3 / 38 MC: 2
Displaying items 251-300 of 363 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_2507 173_001_scaffold_2507
Species: Paenibacillus terrae (50%)
2 2148 bp 26.26 9.08 94.27
NECEvent2014_3_3_scaffold_1996 173_001_scaffold_1996
Species: Alkaliphilus oremlandii (100%)
2 2643 bp 32.39 11.01 90.01
NECEvent2014_3_3_scaffold_2765 173_001_scaffold_2765
Species: Enterobacter aerogenes (100%)
2 1939 bp 46.67 5.65 72.72
NECEvent2014_3_3_scaffold_4494 173_001_scaffold_4494
Species: Klebsiella pneumoniae (50%)
2 1155 bp 36.02 4.42 86.49
NECEvent2014_3_3_scaffold_2767 173_001_scaffold_2767
Species: Alkaliphilus metalliredigens (100%)
2 1938 bp 29.10 7.04 99.23
NECEvent2014_3_3_scaffold_2256 173_001_scaffold_2256
Species: Dethiobacter alkaliphilus (100%)
2 2367 bp 28.60 7.35 86.31
NECEvent2014_3_3_scaffold_2768 173_001_scaffold_2768
Species: Desulfotomaculum ruminis (50%)
2 1937 bp 32.42 10.53 53.90
NECEvent2014_3_3_scaffold_3792 173_001_scaffold_3792
Species: [Clostridium] hylemonae (50%)
2 1398 bp 28.04 7.30 48.07
NECEvent2014_3_3_scaffold_1489 173_001_scaffold_1489
Species: Clostridium butyricum (50%)
2 3600 bp 27.08 6.42 98.58
NECEvent2014_3_3_scaffold_2260 173_001_scaffold_2260
Species: Alkaliphilus metalliredigens (50%)
2 2363 bp 32.16 9.90 93.69
NECEvent2014_3_3_scaffold_4245 173_001_scaffold_4245
Species: Enterobacter aerogenes (100%)
2 1231 bp 54.02 5.48 82.13
NECEvent2014_3_3_scaffold_4251 173_001_scaffold_4251
Species: Eremococcus coleocola (50%)
2 1230 bp 29.51 7.80 73.90
NECEvent2014_3_3_scaffold_2524 173_001_scaffold_2524
Species: Clostridiales bacterium S5-A14a (50%)
2 2133 bp 32.72 9.49 87.90
NECEvent2014_3_3_scaffold_4253 173_001_scaffold_4253
Species: Enterobacter aerogenes (50%)
2 1229 bp 60.29 4.64 100.57
NECEvent2014_3_3_scaffold_4510 173_001_scaffold_4510
Species: Paenibacillus sp. FSL R7-269 (50%)
2 1149 bp 26.46 8.36 89.82
NECEvent2014_3_3_scaffold_2782 173_001_scaffold_2782
Species: Enterobacter aerogenes (50%)
2 1927 bp 53.55 6.23 89.36
NECEvent2014_3_3_scaffold_3806 173_001_scaffold_3806
Species: Escherichia coli (50%)
2 1393 bp 51.62 4.31 100.14
NECEvent2014_3_3_scaffold_3808 173_001_scaffold_3808
Species: Caloranaerobacter azorensis (50%)
2 1391 bp 31.13 6.47 79.80
NECEvent2014_3_3_scaffold_3297 173_001_scaffold_3297
Species: Clostridium sp. BL8 (50%)
2 1627 bp 32.02 8.30 86.29
NECEvent2014_3_3_scaffold_2274 173_001_scaffold_2274
Species: Clostridium aceticum (100%)
2 2350 bp 29.49 8.43 89.74
NECEvent2014_3_3_scaffold_2786 173_001_scaffold_2786
Species: Methanosarcina sp. WH1 (50%)
2 1924 bp 27.29 8.58 73.13
NECEvent2014_3_3_scaffold_2532 173_001_scaffold_2532
Species: Fervidicella metallireducens (50%)
2 2127 bp 30.65 6.77 97.18
NECEvent2014_3_3_scaffold_4268 173_001_scaffold_4268
Species: [Clostridium] papyrosolvens (50%)
2 1225 bp 35.59 30.98 96.49
NECEvent2014_3_3_scaffold_492 173_001_scaffold_492
Species: Bacillus mycoides (100%)
2 10180 bp 37.64 61.24 99.70
NECEvent2014_3_3_scaffold_3565 173_001_scaffold_3565
Species: [Clostridium] celerecrescens (100%)
2 1495 bp 42.01 10.54 99.13
NECEvent2014_3_3_scaffold_2551 173_001_scaffold_2551
Species: Youngiibacter fragilis (50%)
2 2119 bp 33.41 10.05 88.91
NECEvent2014_3_3_scaffold_3063 173_001_scaffold_3063
Species: Streptococcus anginosus (50%)
2 1752 bp 46.35 5.65 82.02
NECEvent2014_3_3_scaffold_3319 173_001_scaffold_3319
Species: Holdemania filiformis (50%)
2 1618 bp 27.75 9.09 72.13
NECEvent2014_3_3_scaffold_4537 173_001_scaffold_4537
Species: Streptococcus anginosus (50%)
2 1141 bp 45.84 7.49 84.93
NECEvent2014_3_3_scaffold_3322 173_001_scaffold_3322
Species: Escherichia coli (50%)
2 1615 bp 51.83 95.67 95.67
NECEvent2014_3_3_scaffold_3835 173_001_scaffold_3835
Species: Clostridium ultunense (50%)
2 1378 bp 27.87 10.12 58.13
NECEvent2014_3_3_scaffold_4284 173_001_scaffold_4284
Species: Clostridium ultunense (50%)
2 1221 bp 32.27 7.13 97.05
NECEvent2014_3_3_scaffold_2819 173_001_scaffold_2819
Species: Caloranaerobacter azorensis (50%)
2 1901 bp 32.04 6.55 87.90
NECEvent2014_3_3_scaffold_4295 173_001_scaffold_4295
Species: Enterobacter aerogenes (100%)
2 1218 bp 56.49 6.65 98.52
NECEvent2014_3_3_scaffold_3599 173_001_scaffold_3599
Species: Clostridiales bacterium S7-1-4 (100%)
2 1480 bp 31.49 36.18 90.81
NECEvent2014_3_3_scaffold_2833 173_001_scaffold_2833
Species: Clostridium botulinum (50%)
2 1892 bp 25.11 5.39 100.85
NECEvent2014_3_3_scaffold_2325 173_001_scaffold_2325
Species: Peptoclostridium difficile (50%)
2 2301 bp 25.86 8.87 94.92
NECEvent2014_3_3_scaffold_4567 173_001_scaffold_4567 2 1132 bp 51.41 52.61 76.86
NECEvent2014_3_3_scaffold_3354 173_001_scaffold_3354 2 1603 bp 27.26 7.86 91.89
NECEvent2014_3_3_scaffold_3611 173_001_scaffold_3611
Species: Enterococcus gallinarum (50%)
2 1474 bp 42.81 4.48 42.74
NECEvent2014_3_3_scaffold_2595 173_001_scaffold_2595
Species: Brevibacillus brevis (50%)
2 2071 bp 36.41 85.25 62.00
NECEvent2014_3_3_scaffold_3365 173_001_scaffold_3365
Species: Clostridium tetanomorphum (50%)
2 1597 bp 27.99 7.70 100.88
NECEvent2014_3_3_scaffold_3621 173_001_scaffold_3621 2 1469 bp 27.09 7.15 34.10
NECEvent2014_3_3_scaffold_2855 173_001_scaffold_2855
Species: Clostridium botulinum (50%)
2 1878 bp 29.13 8.79 80.35
NECEvent2014_3_3_scaffold_3371 173_001_scaffold_3371
Species: Treponema lecithinolyticum (100%)
1 1594 bp 34.69 9.13 99.94
NECEvent2014_3_3_scaffold_3631 173_001_scaffold_3631
Species: Haloplasma contractile (100%)
1 1466 bp 28.04 6.14 99.86
NECEvent2014_3_3_scaffold_4849 173_001_scaffold_4849
Species: Paenibacillus polymyxa (100%)
1 1050 bp 28.38 5.71 77.71
NECEvent2014_3_3_scaffold_3378 173_001_scaffold_3378 1 1591 bp 44.50 20.36 6.60
NECEvent2014_3_3_scaffold_4852 173_001_scaffold_4852
Species: GWB2_Clostridiales_37_7_curated (100%)
1 1050 bp 28.10 7.43 99.71
NECEvent2014_3_3_scaffold_4861 173_001_scaffold_4861
Species: Streptococcus sp. oral taxon 058 (100%)
1 1047 bp 36.77 31.52 90.26
Displaying items 251-300 of 363 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.