ggKbase home page
Advanced Search
Search Help

NECEvent2014_4_6_UNK

In projects: NECEvent2014_4_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 19.24 Longest contig: 12.80 Kbp Bin length: 1.10 Mbp GC content: 39.58 %
Contigs count: 563 Features count: 1468 rRNAs count: 3 tRNAs count: 29

Genome completeness

partial RP 2 / 55 BSCG 0 / 51 ASCG 6 / 38 MC: 1
Displaying items 301-350 of 563 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_6_scaffold_2974 174_006_scaffold_2974
Species: Enterococcus casseliflavus (50%)
2 1544 bp 33.61 11.66 75.58
NECEvent2014_4_6_scaffold_4863 174_006_scaffold_4863
Species: Eggerthella lenta (50%)
2 1045 bp 57.22 3.44 78.66
NECEvent2014_4_6_scaffold_4608 174_006_scaffold_4608
Species: Propionimicrobium lymphophilum (100%)
2 1091 bp 62.97 2.47 100.09
NECEvent2014_4_6_scaffold_3747 174_006_scaffold_3747
Species: Fusobacterium nucleatum (50%)
2 1293 bp 33.80 6.73 93.74
NECEvent2014_4_6_scaffold_2725 174_006_scaffold_2725
Species: Facklamia hominis (50%)
2 1647 bp 35.15 3.83 61.20
NECEvent2014_4_6_scaffold_4099 174_006_scaffold_4099
Species: Clostridium sp. 7_2_43FAA (50%)
2 1196 bp 26.34 4.39 83.28
NECEvent2014_4_6_scaffold_3238 174_006_scaffold_3238
Species: Enterobacter sp. 35669 (50%)
2 1446 bp 56.29 5.71 77.59
NECEvent2014_4_6_scaffold_2729 174_006_scaffold_2729
Species: Clostridium perfringens (50%)
2 1645 bp 31.79 3.28 106.32
NECEvent2014_4_6_scaffold_4359 174_006_scaffold_4359
Species: Klebsiella variicola CAG:634 (50%)
2 1139 bp 38.45 5.00 43.20
NECEvent2014_4_6_scaffold_3501 174_006_scaffold_3501
Species: Peptoniphilus harei (100%)
2 1358 bp 41.02 3.09 94.77
NECEvent2014_4_6_scaffold_2735 174_006_scaffold_2735
Species: Peptoniphilus duerdenii (100%)
2 1641 bp 24.92 6.03 92.87
NECEvent2014_4_6_scaffold_4110 174_006_scaffold_4110
Species: Peptoniphilus harei (100%)
2 1193 bp 33.11 3.77 100.59
NECEvent2014_4_6_scaffold_1970 174_006_scaffold_1970
Species: Peptoniphilus duerdenii (50%)
2 2120 bp 28.16 7.36 55.47
NECEvent2014_4_6_scaffold_2482 174_006_scaffold_2482
Species: Klebsiella pneumoniae (50%)
2 1769 bp 55.34 11.45 29.00
NECEvent2014_4_6_scaffold_4113 174_006_scaffold_4113
Species: Xenorhabdus bovienii (50%)
2 1193 bp 49.20 7.42 100.59
NECEvent2014_4_6_scaffold_2996 174_006_scaffold_2996
Species: Pluralibacter gergoviae (50%)
2 1536 bp 47.20 9.38 79.10
NECEvent2014_4_6_scaffold_2231 174_006_scaffold_2231
Species: Eubacterium ramulus (50%)
2 1905 bp 30.81 6.46 100.32
NECEvent2014_4_6_scaffold_2744 174_006_scaffold_2744
Species: Bifidobacterium saguini (50%)
2 1635 bp 58.23 178.44 54.86
NECEvent2014_4_6_scaffold_5027 174_006_scaffold_5027
Species: Eggerthella sp. HGA1 (50%)
2 1020 bp 62.45 3.82 97.35
NECEvent2014_4_6_scaffold_5028 174_006_scaffold_5028
Species: Klebsiella pneumoniae (100%)
2 1020 bp 58.82 5.59 98.53
NECEvent2014_4_6_scaffold_4380 174_006_scaffold_4380
Species: Roseburia sp. CAG:380 (50%)
2 1135 bp 27.93 5.29 81.41
NECEvent2014_4_6_scaffold_3778 174_006_scaffold_3778
Species: Peptoniphilus harei (100%)
2 1282 bp 40.80 3.98 99.22
NECEvent2014_4_6_scaffold_5034 174_006_scaffold_5034
Species: Peptoniphilus harei (100%)
2 1018 bp 37.62 2.95 98.72
NECEvent2014_4_6_scaffold_3523 174_006_scaffold_3523
Species: Peptoniphilus harei (100%)
2 1352 bp 34.69 3.11 94.75
NECEvent2014_4_6_scaffold_3782 174_006_scaffold_3782
Species: Peptoniphilus duerdenii (50%)
2 1281 bp 29.12 3.16 79.16
NECEvent2014_4_6_scaffold_3785 174_006_scaffold_3785
Species: Escherichia coli (50%)
2 1280 bp 47.66 4.69 52.73
NECEvent2014_4_6_scaffold_4649 174_006_scaffold_4649
Species: Peptoniphilus harei (100%)
2 1083 bp 37.30 3.60 88.37
NECEvent2014_4_6_scaffold_2256 174_006_scaffold_2256
Species: Veillonella dispar (100%)
2 1889 bp 36.58 10.64 91.16
NECEvent2014_4_6_scaffold_3281 174_006_scaffold_3281
Species: Clostridium baratii (50%)
2 1433 bp 28.68 5.44 94.84
NECEvent2014_4_6_scaffold_2771 174_006_scaffold_2771
Species: Paenibacillus dendritiformis (50%)
2 1621 bp 28.19 4.90 95.31
NECEvent2014_4_6_scaffold_3795 174_006_scaffold_3795
Species: Peptoniphilus lacrimalis (50%)
2 1278 bp 28.17 6.34 98.59
NECEvent2014_4_6_scaffold_4658 174_006_scaffold_4658
Species: Salmonella enterica (50%)
2 1082 bp 48.52 5.68 70.70
NECEvent2014_4_6_scaffold_5054 174_006_scaffold_5054
Species: Veillonella dispar (100%)
2 1016 bp 42.22 15.35 100.69
NECEvent2014_4_6_scaffold_2263 174_006_scaffold_2263
Species: Clostridium celatum (50%)
2 1885 bp 31.09 4.93 96.76
NECEvent2014_4_6_scaffold_4918 174_006_scaffold_4918
Species: Klebsiella pneumoniae (100%)
2 1037 bp 55.93 4.05 92.00
NECEvent2014_4_6_scaffold_3033 174_006_scaffold_3033
Species: Veillonella dispar (100%)
2 1523 bp 40.45 10.54 92.78
NECEvent2014_4_6_scaffold_5057 174_006_scaffold_5057
Species: Peptoniphilus harei (100%)
2 1016 bp 34.35 2.66 97.74
NECEvent2014_4_6_scaffold_3802 174_006_scaffold_3802
Species: Peptoniphilus indolicus (50%)
2 1277 bp 30.07 5.64 100.55
NECEvent2014_4_6_scaffold_5060 174_006_scaffold_5060
Species: Klebsiella pneumoniae (100%)
2 1015 bp 53.00 3.40 86.01
NECEvent2014_4_6_scaffold_4410 174_006_scaffold_4410
Species: Peptoniphilus harei (100%)
2 1129 bp 39.59 5.05 87.69
NECEvent2014_4_6_scaffold_4158 174_006_scaffold_4158
Species: Bacillus cereus (50%)
2 1184 bp 25.51 4.69 100.08
NECEvent2014_4_6_scaffold_1761 174_006_scaffold_1761
Species: Cedecea neteri (50%)
2 2335 bp 38.63 6.23 55.25
NECEvent2014_4_6_scaffold_4159 174_006_scaffold_4159
Species: Clostridium cellulovorans (50%)
2 1184 bp 24.66 4.81 84.88
NECEvent2014_4_6_scaffold_4671 174_006_scaffold_4671
Species: Peptoniphilus harei (100%)
2 1080 bp 31.67 4.44 98.61
NECEvent2014_4_6_scaffold_4928 174_006_scaffold_4928
Species: Peptoniphilus harei (100%)
2 1035 bp 44.25 4.06 100.87
NECEvent2014_4_6_scaffold_2789 174_006_scaffold_2789
Species: Eggerthella sp. HGA1 (100%)
2 1614 bp 62.14 3.72 85.13
NECEvent2014_4_6_scaffold_4675 174_006_scaffold_4675
Species: Klebsiella variicola (100%)
2 1079 bp 51.53 6.12 83.41
NECEvent2014_4_6_scaffold_2535 174_006_scaffold_2535
Species: Escherichia coli (100%)
2 1740 bp 55.17 14.05 69.83
NECEvent2014_4_6_scaffold_4165 174_006_scaffold_4165
Species: Bacillus boroniphilus (50%)
2 1183 bp 28.57 6.59 100.68
NECEvent2014_4_6_scaffold_2536 174_006_scaffold_2536
Species: Klebsiella pneumoniae (50%)
2 1739 bp 58.88 4.31 99.02
Displaying items 301-350 of 563 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.