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NECEvent2014_4_6_UNK

In projects: NECEvent2014_4_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 19.24 Longest contig: 12.80 Kbp Bin length: 1.10 Mbp GC content: 39.58 %
Contigs count: 563 Features count: 1468 rRNAs count: 3 tRNAs count: 29

Genome completeness

partial RP 2 / 55 BSCG 0 / 51 ASCG 6 / 38 MC: 1
Displaying items 351-400 of 563 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_6_scaffold_3304 174_006_scaffold_3304
Species: Klebsiella variicola (50%)
2 1426 bp 58.98 6.73 103.93
NECEvent2014_4_6_scaffold_4934 174_006_scaffold_4934
Species: Streptococcus sp. ACS2 (50%)
2 1034 bp 42.65 2.32 100.10
NECEvent2014_4_6_scaffold_3307 174_006_scaffold_3307
Species: Yokenella regensburgei (50%)
2 1424 bp 43.05 5.90 96.07
NECEvent2014_4_6_scaffold_2287 174_006_scaffold_2287
Species: Youngiibacter fragilis (50%)
2 1873 bp 28.83 6.09 99.31
NECEvent2014_4_6_scaffold_4941 174_006_scaffold_4941
Species: Peptococcaceae bacterium BRH_c23 (50%)
2 1033 bp 27.40 4.65 68.54
NECEvent2014_4_6_scaffold_4430 174_006_scaffold_4430
Species: Klebsiella pneumoniae (50%)
2 1125 bp 49.33 7.20 49.60
NECEvent2014_4_6_scaffold_3825 174_006_scaffold_3825
Species: Paenibacillus sp. FSL H8-237 (50%)
2 1268 bp 29.26 4.02 99.37
NECEvent2014_4_6_scaffold_4944 174_006_scaffold_4944 2 1033 bp 28.17 6.39 76.96
NECEvent2014_4_6_scaffold_3067 174_006_scaffold_3067
Species: Enterococcus gallinarum (50%)
2 1510 bp 56.56 4.77 92.38
NECEvent2014_4_6_scaffold_3579 174_006_scaffold_3579
Species: Eggerthella sp. HGA1 (100%)
2 1338 bp 63.83 2.47 94.84
NECEvent2014_4_6_scaffold_4953 174_006_scaffold_4953
Species: Peptoniphilus harei (50%)
2 1032 bp 37.60 2.62 96.22
NECEvent2014_4_6_scaffold_4442 174_006_scaffold_4442
Species: Klebsiella pneumoniae (100%)
2 1123 bp 57.08 6.01 88.96
NECEvent2014_4_6_scaffold_2301 174_006_scaffold_2301
Species: Lachnospiraceae bacterium 3-2 (50%)
2 1866 bp 27.49 5.87 92.28
NECEvent2014_4_6_scaffold_4443 174_006_scaffold_4443
Species: Peptoniphilus lacrimalis (50%)
2 1123 bp 32.15 5.74 86.82
NECEvent2014_4_6_scaffold_3838 174_006_scaffold_3838
Species: Clostridium scatologenes (50%)
2 1264 bp 25.16 3.80 82.83
NECEvent2014_4_6_scaffold_3839 174_006_scaffold_3839
Species: Firmicutes bacterium CAG:83 (100%)
2 1264 bp 32.28 6.17 93.04
NECEvent2014_4_6_scaffold_2816 174_006_scaffold_2816
Species: Clostridium sp. IBUN22A (50%)
2 1605 bp 32.40 71.40 99.81
NECEvent2014_4_6_scaffold_2305 174_006_scaffold_2305
Species: Actinomyces urogenitalis (50%)
2 1863 bp 47.99 30.92 81.48
NECEvent2014_4_6_scaffold_4959 174_006_scaffold_4959
Species: Klebsiella pneumoniae (50%)
2 1031 bp 55.19 4.66 82.64
NECEvent2014_4_6_scaffold_2562 174_006_scaffold_2562
Species: Eubacterium sp. 3_1_31 (100%)
2 1728 bp 27.84 6.42 97.05
NECEvent2014_4_6_scaffold_3586 174_006_scaffold_3586
Species: Cronobacter sakazakii (50%)
2 1336 bp 54.94 41.32 95.66
NECEvent2014_4_6_scaffold_5099 174_006_scaffold_5099
Species: Eggerthella lenta (50%)
2 1008 bp 69.74 2.98 97.02
NECEvent2014_4_6_scaffold_4961 174_006_scaffold_4961
Species: Peptoclostridium difficile (100%)
2 1031 bp 57.13 4.95 86.13
NECEvent2014_4_6_scaffold_3332 174_006_scaffold_3332
Species: Peptoniphilus harei (100%)
2 1416 bp 34.25 3.39 98.94
NECEvent2014_4_6_scaffold_3590 174_006_scaffold_3590
Species: Raoultella planticola (100%)
2 1335 bp 33.03 6.52 97.08
NECEvent2014_4_6_scaffold_4965 174_006_scaffold_4965
Species: Enterococcus faecium (50%)
2 1030 bp 38.54 2.91 100.49
NECEvent2014_4_6_scaffold_4198 174_006_scaffold_4198
Species: Peptostreptococcus anaerobius (50%)
2 1175 bp 37.87 4.34 100.60
NECEvent2014_4_6_scaffold_2057 174_006_scaffold_2057
Species: Raoultella ornithinolytica (100%)
2 2040 bp 57.25 7.94 98.68
NECEvent2014_4_6_scaffold_3593 174_006_scaffold_3593
Species: Peptoniphilus harei (100%)
2 1334 bp 38.16 4.16 98.50
NECEvent2014_4_6_scaffold_4711 174_006_scaffold_4711
Species: Peptostreptococcus anaerobius (50%)
2 1073 bp 29.64 3.08 90.31
NECEvent2014_4_6_scaffold_2826 174_006_scaffold_2826
Species: Klebsiella variicola (100%)
2 1601 bp 58.21 7.12 99.31
NECEvent2014_4_6_scaffold_3340 174_006_scaffold_3340
Species: Klebsiella pneumoniae (100%)
2 1413 bp 51.73 4.46 81.95
NECEvent2014_4_6_scaffold_4970 174_006_scaffold_4970
Species: Peptoniphilus sp. oral taxon 386 (50%)
2 1029 bp 29.35 2.92 98.83
NECEvent2014_4_6_scaffold_1550 174_006_scaffold_1550
Species: Enterococcus caccae (50%)
2 2605 bp 30.10 6.74 88.33
NECEvent2014_4_6_scaffold_3342 174_006_scaffold_3342
Species: Eubacterium ramulus (50%)
2 1413 bp 27.18 3.18 90.02
NECEvent2014_4_6_scaffold_4973 174_006_scaffold_4973
Species: Peptoniphilus harei (100%)
2 1028 bp 32.10 2.33 101.85
NECEvent2014_4_6_scaffold_4462 174_006_scaffold_4462
Species: Klebsiella pneumoniae (100%)
2 1119 bp 55.94 5.63 88.74
NECEvent2014_4_6_scaffold_1303 174_006_scaffold_1303
Species: Serratia marcescens (100%)
2 3045 bp 54.02 8.42 83.84
NECEvent2014_4_6_scaffold_1559 174_006_scaffold_1559
Species: Treponema socranskii (50%)
2 2590 bp 30.54 5.21 90.58
NECEvent2014_4_6_scaffold_4726 174_006_scaffold_4726
Species: Peptoniphilus harei (100%)
2 1069 bp 38.45 4.77 98.50
NECEvent2014_4_6_scaffold_5121 174_006_scaffold_5121
Species: Escherichia coli (50%)
2 1005 bp 55.92 3.28 98.81
NECEvent2014_4_6_scaffold_3355 174_006_scaffold_3355
Species: Turicibacter sanguinis (50%)
2 1408 bp 29.76 4.26 99.50
NECEvent2014_4_6_scaffold_2333 174_006_scaffold_2333
Species: Finegoldia magna (50%)
2 1847 bp 31.24 6.33 95.02
NECEvent2014_4_6_scaffold_2078 174_006_scaffold_2078
Species: Sutterella wadsworthensis CAG:135 (50%)
2 2024 bp 47.23 32.46 27.87
NECEvent2014_4_6_scaffold_4479 174_006_scaffold_4479
Species: Peptoniphilus harei (100%)
2 1116 bp 37.54 5.11 98.92
NECEvent2014_4_6_scaffold_2852 174_006_scaffold_2852
Species: Finegoldia magna (50%)
2 1592 bp 30.84 4.15 81.41
NECEvent2014_4_6_scaffold_4484 174_006_scaffold_4484
Species: Paenibacillus sp. MSt1 (50%)
2 1115 bp 30.04 2.83 68.07
NECEvent2014_4_6_scaffold_3623 174_006_scaffold_3623
Species: Anaerofustis stercorihominis (50%)
2 1325 bp 28.45 6.11 100.30
NECEvent2014_4_6_scaffold_4997 174_006_scaffold_4997
Species: Peptoniphilus harei (100%)
2 1024 bp 36.72 3.81 95.21
NECEvent2014_4_6_scaffold_2344 174_006_scaffold_2344 2 1839 bp 28.00 4.40 31.16
Displaying items 351-400 of 563 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.