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NECEvent2014_3_3_scaffold_822_4

Organism: NECEvent2014_3_3_Clostridium_ultunense-rel_31_8

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 14 / 38 MC: 3
Location: comp(2911..6471)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1288971 species="Bacteria; F similarity UNIPROT
DB: UniProtKB
  • Identity: 66.4
  • Coverage: 999.99
  • Bit_score: 1586
  • Evalue 0.0
mfd; transcription-repair coupling factor (EC:3.6.4.-) similarity KEGG
DB: KEGG
  • Identity: 61.2
  • Coverage: 999.99
  • Bit_score: 1448
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Clostridium ultunense Esp RepID=M1ZF58_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 66.4
  • Coverage: 999.99
  • Bit_score: 1586
  • Evalue 0.0
  • rbh

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Taxonomy

Clostridium ultunense → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3561
GGATTAGACCTGGGCTATGGTCTTTTCCGAAGGAGTGAAGGTATGCTAAATTTTTTAGTAGATCCGCTAAATAACTTAGATGTTTATAATAAGCTGAAGACAGATATAGAAAAGAAGAATAGTCCTATGGCCACTTATGGTATTATTGATGAAAGCATAGGACATATTCTTTATGCCCTAAGGGAGCATACTAAAAGGCAAATACTATTGGTAACTTACAACGAGGTAAGAAGTAGAAAGATTTATGAAGATATAAGAAACTTAGGAAATAATAATGTATTTCTGCTTCCAAAAAGGGAATTAGTTTTTTATGAAGTAGATGCCTTCAGCTATGAAAGTACCAATGAAAGGCTTGGGATTGTATCTAGACTTGTAAAAGGCGAAGATTTATTATTAGTTACCTCTATAGAAGCCATATTTCATAAGCTTATGTCTAGAGATGTTTTGAAGTCCTATTCCCATGAATTGAGATTAGGAGAAGAAATAAACTTAGATGATTTAATTAAGTTGTTGACAGATGGTGGATATGAAAGAGTAAATATGGTGGAAGGTATAGGACAGTTTAGCTTAAGAGGTGGAATTATGGATTTCTTTCCGCCATATAGCGGGAACCCTATTAGAATTGAATTGTTTGATGAGGAAATTGATTCTATAAGGACTTTTGATATTACGAATCAAAGATCTATTGAAGTCCTCGATTATACATTCATATTTCCAGTAAAAGAAACTTTGATATTAGATGAATATAGAGAGAATATAATTGACAACTTGAATAAAGATTTAATTAAATCTTTATCTAAGTCAAAGATTAGTGTAATAGAAAAAGAAAACTTAGAAAGTAAGTTTAATAAATATAAGGAGCATTTAACTGAAAAATTATTTATATCTAATATGGATATGATAATTCCTTATATACCAAAAGAATATCTGTCATCTATAATTAGTTATTTAAAAGAAGACGCAATAATTTATATAGACGAGCCTAAAAGAATAGAAGAAAGTGTAAAAAATGCTGGAAGTGATTTTAATCTAAAGTTTACAGACCTCTATGAAGTTGGAGAGGTATTACCTTTACATGCCAATATTCTTTATAGTTATGATGAACTATTAGAAGAAATAAAGAAAAGAACATGTATCGCAAATAGTGCACTTTTAAGTGGAGATAATAGTTTTAAACCTAAAGTAATTCATAATTTCTCCGTAAAAGGAATGCCATCTTATCATAATAAGATGGATATTTTAAAAGAGGATATCGATCATTTTAAATATAGAGGATATAAAATAATTATACTTTCAGGAACAGAAGAAAGAGGTAGAAGGCTTTATAAAACATTATTGGAAATGGGTATAGAATCAAACTTTATGATAGATAAAAATGCTGAGATTAAGTCCTCACAAGTTTTTATTACACCTGGTAGTATTCATGGAGGATTTGAATATCCAGCTTTAAAGCTTATTGTTATCAGTGATAAAGAAATATTTGGTGCGGGAAAGAAAAAAACAGGGAAATTAAGGAAAAAAGATCCTAGCAAATCCATTAGCTTTTCTGATTTGAATGTTGGCGATTATGTAGTACATGAAAACCATGGAATAGGTAGATATGAAGGTGTAGAGCAGCTTAACATTCAAGGAATAAAGAAGGATTATCTTACTATAAGGTATAAAGGCGAAGATAAGCTATATGTACCTATAGATCAAATGCATTTAATCCAGAAGTATATCGGCTCTGATAGCATAAAACCAAAAGTAAATAAACTATCTAGTTCAGAATGGGCTAGAACTAAGGAAAAAGCTAAGAAGGCTGTAGAAGATATGGCTCATGATTTATTAGAGCTATATGCAAAGAGAGAGAGTTATAAGGGATTTGTTTTCTCTAAGGATGGTGAATGGCAACGACAATTTGAAGATTTATTCCCTTATGAAGAGACAGAAGGACAGTCTAGGAGTATTATAGAAATCAAGAAGGATATGGAAAGACCAAAACCAATGGATAGACTTCTTTGTGGTGATGTTGGATATGGGAAAACGGAAGTGGCTTTAAGAGCAGCATTTAAAGCTGTCATGGATGGAAAACAAGTAGCTTTTCTAGTACCTACTACTATTCTTGCACAGCAGCATTATAATACAATAATGGAGAGATTTACCAATTTTCCCGTTAAAATAGCTACCCTTAGTAGGTTCAGAACTAAAGCAGAACAAAAACTTGCAATTGATAGCATCAGAAGAGGTGTTGTTGATATTGTAGTAGGTACTCATAGATTATTATCTAAAGATGTTTCTTTTAATGATTTGGGTTTATTAATAATAGATGAAGAACAGAGATTTGGCGTAAAGCATAAAGAGGCACTTAAAAAATTTAAAGAAACAGTGGATGTACTTACTCTTACAGCTACACCTATACCTAGGACATTACATATGTCCTTATCAGGCATTAGAGATATGTCTGTTATTGAAGATCCTCCAGAGGAAAGGTATCCCGTACAAACCTATGTTGTTGAATTTAATGAACAAATGATCAGAGATGCAATACTAAAGGAAGTTGGTCGTGGAGGACAGGTTTATTTTGTATATAATAGGGTCGAGACTATAGATAAGATTGCTTCCATGCTTAGAAAATTAGTACCAGAAGCAAAATTCTCCATAGGACATGGTCAAATGAGTGAGCGAGAATTAGAGAAGGTAATGGTTAGCTTTTTAGAAAAAGAAGTGGACGTTCTAGTATGCACTACTATTATTGAAACAGGATTAGATATTCCAAATGTAAATACTATAATAATACATGATGCTGATAAGATGGGACTATCTCAACTATACCAACTTAGGGGAAGGGTAGGAAGGTCTAATAGGATAGCTTATGGATACTTTACCTATGAGAAAAATAAAGTGTTATCAGAGGTAGCGGAAAAAAGACTTAGAGCTATAAAGGAATTTACAGAATTTGGTTCAGGTTTTAAAATAGCTATGAGAGACTTGGAAATAAGAGGTGCAGGAAATCTTCTAGGATTAGAACAGCATGGTCATATTGAGGCCATAGGATATGATTTATATGTAAAGTTCTTAAATGAGGCTATTAGGAGACTGAAGGGTGAGAAAGTCGAAGAACATATAGATACTACAGTTGATATAAAGGTAGATGGGTATATTAAGTCTAGGTATATTGAAGATGAAGAACAGAAGATAGAAGTGTACAAAAAAATCGCTTCTATTTCTAATATGGATGATTATAGGGAATTACTGGATGAACTAATTGATAGATTTGGAGATTTACCTAAGGAAGTTGAAAATCTAATGGATATTTCTTACATCAGGTATTTAGGAAGTAAAAATAATATTAGAAATATAATCCAAATAGACAAAGAGGTTATCTTAGAGTTTAGCTCTACAGAAAATATATCAGTTGAGCTGTTGCACCTCTTATCTACTGAATATGGAAGAAGATTATCATTTGATTTATCTACTGAACCATCCTTTAAATTTAGGTCAAAGAATAAAATTTTAGATGAGTTAAAATCTTTGGTTGAAAAAATTAATGGTTTTAATCATAGAAAAAATAATATATAA
PROTEIN sequence
Length: 1187
GLDLGYGLFRRSEGMLNFLVDPLNNLDVYNKLKTDIEKKNSPMATYGIIDESIGHILYALREHTKRQILLVTYNEVRSRKIYEDIRNLGNNNVFLLPKRELVFYEVDAFSYESTNERLGIVSRLVKGEDLLLVTSIEAIFHKLMSRDVLKSYSHELRLGEEINLDDLIKLLTDGGYERVNMVEGIGQFSLRGGIMDFFPPYSGNPIRIELFDEEIDSIRTFDITNQRSIEVLDYTFIFPVKETLILDEYRENIIDNLNKDLIKSLSKSKISVIEKENLESKFNKYKEHLTEKLFISNMDMIIPYIPKEYLSSIISYLKEDAIIYIDEPKRIEESVKNAGSDFNLKFTDLYEVGEVLPLHANILYSYDELLEEIKKRTCIANSALLSGDNSFKPKVIHNFSVKGMPSYHNKMDILKEDIDHFKYRGYKIIILSGTEERGRRLYKTLLEMGIESNFMIDKNAEIKSSQVFITPGSIHGGFEYPALKLIVISDKEIFGAGKKKTGKLRKKDPSKSISFSDLNVGDYVVHENHGIGRYEGVEQLNIQGIKKDYLTIRYKGEDKLYVPIDQMHLIQKYIGSDSIKPKVNKLSSSEWARTKEKAKKAVEDMAHDLLELYAKRESYKGFVFSKDGEWQRQFEDLFPYEETEGQSRSIIEIKKDMERPKPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAFLVPTTILAQQHYNTIMERFTNFPVKIATLSRFRTKAEQKLAIDSIRRGVVDIVVGTHRLLSKDVSFNDLGLLIIDEEQRFGVKHKEALKKFKETVDVLTLTATPIPRTLHMSLSGIRDMSVIEDPPEERYPVQTYVVEFNEQMIRDAILKEVGRGGQVYFVYNRVETIDKIASMLRKLVPEAKFSIGHGQMSERELEKVMVSFLEKEVDVLVCTTIIETGLDIPNVNTIIIHDADKMGLSQLYQLRGRVGRSNRIAYGYFTYEKNKVLSEVAEKRLRAIKEFTEFGSGFKIAMRDLEIRGAGNLLGLEQHGHIEAIGYDLYVKFLNEAIRRLKGEKVEEHIDTTVDIKVDGYIKSRYIEDEEQKIEVYKKIASISNMDDYRELLDELIDRFGDLPKEVENLMDISYIRYLGSKNNIRNIIQIDKEVILEFSSTENISVELLHLLSTEYGRRLSFDLSTEPSFKFRSKNKILDELKSLVEKINGFNHRKNNI*