ggKbase home page

NECEvent2014_3_5_scaffold_288

Alias: 173_003_scaffold_288

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_scaffold_288_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..813
DNA (813bp) protein (271aa)
PDZ domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHX8_CLOBU rbh
Cell division topological determinant MinJ {ECO:0000313|EMBL:KJZ94577.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp.
hypothetical protein
NECEvent2014_3_5_scaffold_288_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1028..3001
DNA (1974bp) protein (658aa)
UvrABC system protein B n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9P2_CLOBU rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
uvrB; UvrABC system protein B
NECEvent2014_3_5_scaffold_288_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3181..6003
DNA (2823bp) protein (941aa)
UvrABC system protein A n=2 Tax=Clostridium butyricum RepID=M8JN72_CLOBU rbh
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
uvrA; UvrABC system protein A
NECEvent2014_3_5_scaffold_288_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6106..6552
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AET8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30637.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
FHA domain-containing protein
NECEvent2014_3_5_scaffold_288_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6754..7974
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSR1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30636.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rodA; FtsW-like protein RodA
NECEvent2014_3_5_scaffold_288_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7976..9451
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YT85_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30635.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
peptidoglycan glycosyltransferase
NECEvent2014_3_5_scaffold_288_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9690..11570
DNA (1881bp) protein (627aa)
UvrABC system protein C n=2 Tax=Clostridium butyricum RepID=M8K9P6_CLOBU rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_0
uvrC; UvrABC system protein C
NECEvent2014_3_5_scaffold_288_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11786..12700
DNA (915bp) protein (305aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037};; UDP-N-acetylmuramate dehydrogenase {ECO:
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A2B6_CLOBU rbh
murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB
NECEvent2014_3_5_scaffold_288_9

Not on your lists

13015..13947
DNA (933bp) protein (311aa)
UPF0042 nucleotide-binding protein CBY_1836 n=4 Tax=Clostridium butyricum RepID=B1QWJ9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ETJ16595.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
NECEvent2014_3_5_scaffold_288_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13896..15251
DNA (1356bp) protein (452aa)
Putative gluconeogenesis factor n=2 Tax=Clostridium butyricum RepID=M8JE07_CLOBU rbh
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 6
hypothetical protein
NECEvent2014_3_5_scaffold_288_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15274..16215
DNA (942bp) protein (314aa)
Putative sporulation transcription regulator WhiA n=4 Tax=Clostridium butyricum RepID=B1QWJ7_CLOBU rbh
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
whiA; putative sporulation transcription regulator WhiA
NECEvent2014_3_5_scaffold_288_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16392..16676
DNA (285bp) protein (95aa)
Stress responsive alpha-beta barrel domain protein n=3 Tax=Clostridium butyricum RepID=B1QWJ6_CLOBU
Stress responsive alpha-beta barrel domain protein {ECO:0000313|EMBL:EEP55914.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostrid
stress responsive A/B barrel domain-containing protein
NECEvent2014_3_5_scaffold_288_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16962..17246)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QWJ5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP55776.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
hypothetical protein
NECEvent2014_3_5_scaffold_288_14

Not on your lists

18170..19438
DNA (1269bp) protein (423aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JE11_CLOBU rbh
DNA polymerase III subunit alpha {ECO:0000313|EMBL:ETJ16590.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_3_5_scaffold_288_15
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19483..20301
DNA (819bp) protein (273aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8KHZ1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94674.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
NECEvent2014_3_5_scaffold_288_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20745..21713
DNA (969bp) protein (323aa)
DNA polymerase III alpha subunit {ECO:0000313|EMBL:KJZ85726.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KJZ85726.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clost
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YT71_CLOBU rbh
NECEvent2014_3_5_scaffold_288_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21769..22677
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACY5_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94673.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
LAGLIDADG-like domain protein
NECEvent2014_3_5_scaffold_288_18

Not on your lists

23014..24198
DNA (1185bp) protein (395aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha n=2 Tax=Clostridium butyricum RepID=B1QWJ0_CLOBU rbh
DNA polymerase III, alpha subunit {ECO:0000313|EMBL:ETJ16588.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_3_5_scaffold_288_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24730..25686
DNA (957bp) protein (319aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:
pfkA; 6-phosphofructokinase PfkA (EC:2.7.1.11)
6-phosphofructokinase n=3 Tax=Clostridium butyricum RepID=B1QWI9_CLOBU rbh
NECEvent2014_3_5_scaffold_288_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25898..27319
DNA (1422bp) protein (474aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
pyk; pyruvate kinase Pyk (EC:2.7.1.40)
Pyruvate kinase n=4 Tax=Clostridium butyricum RepID=B1QWI8_CLOBU rbh
NECEvent2014_3_5_scaffold_288_21

Not on your lists

27830..28192
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8K9R0_CLOBU
Nucleotidyltransferase family protein {ECO:0000313|EMBL:ETJ16585.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_3_5_scaffold_288_22

Not on your lists

28205..28300
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACX9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16584.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_3_5_scaffold_288_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28334..29698
DNA (1365bp) protein (455aa)
RNA methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A2A1_CLOBU rbh
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ENZ30618.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium but
NECEvent2014_3_5_scaffold_288_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29998..31227
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YYL6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ32575.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
Displaying 24 items

View Taxonomy