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NECEvent2014_3_5_scaffold_556_5

Organism: NECEvent2014_3_5_Atopobium_minutum-rel_49_9

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(4365..5720)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=2 Tax=Atopobium RepID=N2BTD8_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 451.0
  • Bit_score: 866
  • Evalue 1.60e-248
  • rbh
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minut similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 451.0
  • Bit_score: 864
  • Evalue 6.50e-248
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 74.7
  • Coverage: 459.0
  • Bit_score: 655
  • Evalue 1.20e-185

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Taxonomy

Atopobium minutum → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1356
GTGGCCGCTAAAAAGCAAAAAGCCGACGTCAAGCTTTCCGAGGAACTCGCGCAGGTTGCTCAAAAGCTTGTAGATGCTTCCGTTAAAAGTGGAAGTATTACAGAAGATGATATCCAAGTTGCCTTACGTGATATCGATATTGAAGATGACGAACTTTCCGATTTGTATGATGCTGTTCGTGCTCGTGGCGTGGAAGTAACTACTGCTGGTGATTCTGAAGCTGCAGGTAGTTTGATGGACGTTTTGGGCGCTGCGGACGACGACGATGCTTCTGTATTTGATGATCTTGATGATGAGGACAAGCGTCCTGGTCTTGATGAGATCAAAATTGCAGATGAGGAGCTTCGCAGTGTTTCTCGTGCCAAGCCCAGCAAAAAGCGGACCACTACGCGTGCTAAGAAGCATGGCAAGTCTGATGCCTCTACGGTGTTGCTTACTGGAGATCCAGTACGCATGTATCTAAAAGAGATTGGTAAGGTAGACCTTCTGAATGCTGCAGAAGAGGTACATCTTGCCATGAAAATTGAGGCAGGTTGTGAAGCTGCCGATAAGCTCGAGGCTGCCGAGAATGGCGAGGTTGAGTTTACGCGTGCACAAATACGCCGTCTTACCCGTGTTGAGCAGGTGGGTCTTGAGGCAAAGCAGGCCCTGATTAGCGCTAACCTGCGTCTGGTTGTATCCATTGCAAAGCGCTATGTTGGTCGCGGCATGCTGTTCTTGGATCTGATTCAAGAGGGTAATCTTGGTCTTATTCGTGCGGTAGAGAAGTTTGATTACACCAAGGGTTTTAAGTTTTCTACCTATGCTACTTGGTGGATTCGCCAGGCTATTACCCGTGCCATTGCAGATCAGGCGCGCACCATCCGCATTCCTGTTCATATGGTTGAAACCATCAATAAGCTTGTTCGTGTCCAACGTCAGCTTCTGCAGGATCTTGGTCGCGATCCAACCCCTGAAGAGATCGCTGAAGAAATGGGCATGACGGCGGATCGCGTACGTGAGATCCAAAAGATTAGCCAAGAGCCTGTTTCTCTGGAAACACCTATTGGTGAAGAAGAGGATTCTCAGCTGGGTGACTTTATCGAAGATGCACAAGCTGTGGCTCCTCCCGATGCAGCTTCTGACTCTATGCTGCATGAGCAGCTTGATCAGGTGCTTGATGGTCTTGCAGATCGTGAGCGTAAGGTTATTAAGCTGCGCTTTGGTTTGGAAGATGGTCATCCTCGAACCCTTGAGGAAGTGGGCCGTGAGTTTGGGGTTACGCGTGAGCGTATTCGTCAGATTGAGTCCAAAACTCTGGCAAAATTGCGCCATCCTTCCAGGTCAGGCAAGCTTAAGGACTATATGGAAGATTAG
PROTEIN sequence
Length: 452
VAAKKQKADVKLSEELAQVAQKLVDASVKSGSITEDDIQVALRDIDIEDDELSDLYDAVRARGVEVTTAGDSEAAGSLMDVLGAADDDDASVFDDLDDEDKRPGLDEIKIADEELRSVSRAKPSKKRTTTRAKKHGKSDASTVLLTGDPVRMYLKEIGKVDLLNAAEEVHLAMKIEAGCEAADKLEAAENGEVEFTRAQIRRLTRVEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIAEEMGMTADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDAQAVAPPDAASDSMLHEQLDQVLDGLADRERKVIKLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSGKLKDYMED*