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NECEvent2014_3_5_scaffold_556

Alias: 173_003_scaffold_556

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_scaffold_556_1
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(3..950)
DNA (948bp) protein (316aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2BJ78_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ41822.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;
family 2 glycosyl transferase
NECEvent2014_3_5_scaffold_556_2
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(950..2038)
DNA (1089bp) protein (363aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Atopobium sp. BV3Ac4 RepID=U2VGD2_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ41821.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;
putative glycosyltransferase
NECEvent2014_3_5_scaffold_556_3
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(2041..3147)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2BTK2_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ41820.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;
ABC transporter
NECEvent2014_3_5_scaffold_556_4
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3162..3992)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2BXZ3_9ACTN rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063
ABC-2 type transporter
NECEvent2014_3_5_scaffold_556_trna_1
unknown

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comp(4220..4291)
DNA (72bp)
transferRNA
NECEvent2014_3_5_scaffold_556_5
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4365..5720)
DNA (1356bp) protein (452aa)
RNA polymerase sigma factor SigA n=2 Tax=Atopobium RepID=N2BTD8_9ACTN rbh
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minut
RpoD subfamily RNA polymerase sigma-70 subunit
NECEvent2014_3_5_scaffold_556_6
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5753..7621)
DNA (1869bp) protein (623aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=997872 species="Bacteria; Actinobacter
DNA primase n=2 Tax=Atopobium RepID=N2BJ70_9ACTN rbh
DNA primase
NECEvent2014_3_5_scaffold_556_7
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7618..8667)
DNA (1050bp) protein (350aa)
Riboflavin biosynthesis protein RibF n=2 Tax=Atopobium RepID=N2BNM0_9ACTN rbh
Riboflavin biosynthesis protein RibF {ECO:0000313|EMBL:EMZ41816.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minut
riboflavin biosynthesis protein RibF
NECEvent2014_3_5_scaffold_556_8
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8667..9629)
DNA (963bp) protein (321aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=2 Tax=Atopobium RepID=N2BTJ7_9ACTN rbh
NECEvent2014_3_5_scaffold_556_9
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9642..10658)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=2 Tax=Atopobium RepID=N2BXY8_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ41814.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;
phosphoesterase RecJ domain-containing protein
NECEvent2014_3_5_scaffold_556_10
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10658..11074)
DNA (417bp) protein (139aa)
Ribosome-binding factor A n=2 Tax=Atopobium RepID=N2BTD0_9ACTN
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;"
ribosome-binding factor A
NECEvent2014_3_5_scaffold_556_11
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11100..11972)
DNA (873bp) protein (291aa)
Translation initiation factor IF-2 n=2 Tax=Atopobium RepID=N2BJ63_9ACTN
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Ato
translation initiation factor IF-2
Displaying 12 items

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