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NECEvent2014_9_1_Candida_parapsilosis_39_137

NECEvent2014_9_1_Candida_parapsilosis_39_129
In projects: NECEvent2014_9_1

Consensus taxonomy: Candida parapsilosis  →  Candida  →  Saccharomycetales  →  Saccharomycetes  →  Ascomycota  →  Fungi

Taxonomy override: Eukaryote

Description

Bin incl. rRNA 100% identity to Candida parapsilosis strain CDC317. 16s rRNA also in Mitochondria bin

Displaying items 301-350 of 405 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_9_1_scaffold_291 182_001_scaffold_291
Species: Candida parapsilosis (80%)
10 19914 bp 38.23 136.61 71.95
NECEvent2014_9_1_scaffold_358 182_001_scaffold_358
Species: Candida parapsilosis (100%)
3 8888 bp 39.53 136.70 61.94
NECEvent2014_9_1_scaffold_421 182_001_scaffold_421
Species: Candida orthopsilosis (50%)
2 5362 bp 37.04 136.74 29.82
NECEvent2014_9_1_scaffold_334 182_001_scaffold_334
Species: Candida parapsilosis (87.5%)
8 19262 bp 38.39 136.82 60.73
NECEvent2014_9_1_scaffold_260 182_001_scaffold_260
Species: Candida parapsilosis (90%)
10 16818 bp 39.26 137.02 66.09
NECEvent2014_9_1_scaffold_77 182_001_scaffold_77
Species: Candida parapsilosis (83.33%)
30 56724 bp 38.76 137.29 81.75
NECEvent2014_9_1_scaffold_276 182_001_scaffold_276
Species: Candida parapsilosis (73.33%)
15 23747 bp 39.06 137.37 83.54
NECEvent2014_9_1_scaffold_211 182_001_scaffold_211
Species: Candida parapsilosis (88.89%)
9 23099 bp 39.08 137.54 71.00
NECEvent2014_9_1_scaffold_695 182_001_scaffold_695
Species: Candida parapsilosis (100%)
3 2342 bp 40.69 137.57 68.53
NECEvent2014_9_1_scaffold_308 182_001_scaffold_308 8 12336 bp 39.36 138.02 56.96
NECEvent2014_9_1_scaffold_195 182_001_scaffold_195
Species: Candida parapsilosis (100%)
7 25560 bp 39.78 138.09 90.54
NECEvent2014_9_1_scaffold_326 182_001_scaffold_326
Species: Candida parapsilosis (66.67%)
6 11004 bp 40.38 138.21 81.98
NECEvent2014_9_1_scaffold_212 182_001_scaffold_212
Species: Candida parapsilosis (66.67%)
12 22735 bp 39.05 138.37 65.85
NECEvent2014_9_1_scaffold_258 182_001_scaffold_258
Species: Candida parapsilosis (75%)
20 32784 bp 38.38 138.41 65.89
NECEvent2014_9_1_scaffold_1077 182_001_scaffold_1077
Species: Candida parapsilosis (66.67%)
3 1497 bp 38.34 138.48 42.89
NECEvent2014_9_1_scaffold_337 182_001_scaffold_337
Species: Candida parapsilosis (66.67%)
3 10357 bp 39.43 138.49 93.47
NECEvent2014_9_1_scaffold_380 182_001_scaffold_380
Species: Candida parapsilosis (75%)
4 7455 bp 39.13 138.97 65.96
NECEvent2014_9_1_scaffold_399 182_001_scaffold_399
Species: Candida parapsilosis (75%)
4 6407 bp 39.68 139.18 79.32
NECEvent2014_9_1_scaffold_234 182_001_scaffold_234
Species: Candida parapsilosis (75%)
12 24979 bp 37.30 139.53 47.48
NECEvent2014_9_1_scaffold_449 182_001_scaffold_449
Species: Candida parapsilosis (50%)
8 4668 bp 40.02 139.65 61.05
NECEvent2014_9_1_scaffold_342 182_001_scaffold_342
Species: Candida parapsilosis (100%)
5 9850 bp 38.76 139.66 87.17
NECEvent2014_9_1_scaffold_285 182_001_scaffold_285
Species: Candida parapsilosis (87.5%)
8 13955 bp 39.70 139.97 79.46
NECEvent2014_9_1_scaffold_364 182_001_scaffold_364 6 9317 bp 39.56 140.11 59.21
NECEvent2014_9_1_scaffold_45 182_001_scaffold_45
Species: Candida parapsilosis (92.59%)
54 76662 bp 39.73 140.34 82.37
NECEvent2014_9_1_scaffold_402 182_001_scaffold_402 6 6232 bp 40.68 140.73 82.27
NECEvent2014_9_1_scaffold_374 182_001_scaffold_374 9 11133 bp 39.04 140.92 56.16
NECEvent2014_9_1_scaffold_299 182_001_scaffold_299
Species: Candida parapsilosis (90%)
10 13010 bp 40.02 140.95 92.42
NECEvent2014_9_1_scaffold_589 182_001_scaffold_589
Species: Candida parapsilosis (100%)
3 3446 bp 38.57 141.64 56.41
NECEvent2014_9_1_scaffold_539 182_001_scaffold_539
Species: Candida parapsilosis (50%)
4 3289 bp 39.01 141.93 38.40
NECEvent2014_9_1_scaffold_384 182_001_scaffold_384
Species: Candida parapsilosis (60%)
5 7097 bp 38.17 141.97 65.65
NECEvent2014_9_1_scaffold_235 182_001_scaffold_235
Species: Candida parapsilosis (76.92%)
13 19684 bp 39.50 142.01 72.77
NECEvent2014_9_1_scaffold_406 182_001_scaffold_406
Species: Candida parapsilosis (50%)
2 6029 bp 38.66 142.14 29.31
NECEvent2014_9_1_scaffold_275 182_001_scaffold_275
Species: Candida parapsilosis (100%)
7 16864 bp 39.75 142.21 72.49
NECEvent2014_9_1_scaffold_928 182_001_scaffold_928
Species: Candida parapsilosis (50%)
2 1734 bp 39.27 142.39 25.26
NECEvent2014_9_1_scaffold_178 182_001_scaffold_178
Species: Candida parapsilosis (75%)
16 27820 bp 39.57 142.45 66.44
NECEvent2014_9_1_scaffold_851 182_001_scaffold_851
Species: Candida parapsilosis (100%)
1 1920 bp 38.91 142.66 100.00
NECEvent2014_9_1_scaffold_882 182_001_scaffold_882
Species: Candida parapsilosis (100%)
2 1853 bp 38.10 143.28 27.68
NECEvent2014_9_1_scaffold_282 182_001_scaffold_282
Species: Candida parapsilosis (85.71%)
7 14251 bp 39.75 144.14 79.34
NECEvent2014_9_1_scaffold_99 182_001_scaffold_99
Species: Candida parapsilosis (88.89%)
27 47033 bp 39.42 144.23 68.28
NECEvent2014_9_1_scaffold_250 182_001_scaffold_250
Species: Candida parapsilosis (100%)
11 17893 bp 39.00 144.44 85.19
NECEvent2014_9_1_scaffold_351 182_001_scaffold_351
Species: Candida parapsilosis (85.71%)
7 9288 bp 40.29 146.35 76.10
NECEvent2014_9_1_scaffold_261 182_001_scaffold_261
Species: Candida parapsilosis (71.43%)
14 21081 bp 39.85 146.54 86.15
NECEvent2014_9_1_scaffold_295 182_001_scaffold_295
Species: Candida parapsilosis (62.5%)
16 15355 bp 39.17 147.58 67.35
NECEvent2014_9_1_scaffold_164 182_001_scaffold_164
Species: Candida parapsilosis (70%)
20 31184 bp 39.15 147.86 65.84
NECEvent2014_9_1_scaffold_279 182_001_scaffold_279
Species: Candida parapsilosis (69.23%)
13 17138 bp 40.93 148.15 74.61
NECEvent2014_9_1_scaffold_724 182_001_scaffold_724
Species: Candida parapsilosis (100%)
2 2256 bp 37.63 148.47 52.79
NECEvent2014_9_1_scaffold_517 182_001_scaffold_517
Species: Candida parapsilosis (100%)
3 3550 bp 39.41 148.56 80.11
NECEvent2014_9_1_scaffold_172 182_001_scaffold_172
Species: Candida parapsilosis (76%)
25 31740 bp 39.22 148.91 74.57
NECEvent2014_9_1_scaffold_335 182_001_scaffold_335
Species: Candida parapsilosis (100%)
4 10429 bp 38.49 149.84 82.39
NECEvent2014_9_1_scaffold_296 182_001_scaffold_296
Species: Candida parapsilosis (75%)
8 13095 bp 39.99 150.34 73.65
Displaying items 301-350 of 405 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.