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ACD80_15_19

Organism: SR1_ACD80

near complete RP 45 / 55 MC: 10 BSCG 42 / 51 ASCG 0 / 38
Location: comp(19618..20085)

Top 3 Functional Annotations

Value Algorithm Source
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40) iprscan interpro
DB: TMHMM
  • Identity: null
  • Coverage: null
  • Bit_score: null
seg (db=Seg db_id=seg from=141 to=152) iprscan interpro
DB: Seg
  • Identity: null
  • Coverage: null
  • Bit_score: null
UPF0081 (db=HMMPfam db_id=PF03652 from=10 to=133 evalue=4.9e-13 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 4.90e-13

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Notes

Swiss-Model found 1zhxA: apparently a holiday junction resolvase Jill Banfield (11/16/12)

Taxonomy

ACD80 → SR1 → Bacteria

Sequences

DNA sequence
Length: 468
ATGCAAACAAACTATCGCAAACAGAAATGTATCCTCGGTATCGATCGAGGGACAAAATATATCGGGTTGGCATACGCGCTTCCAGGAAGCGATGTAGTTTTTCCTATCGGATATATCCTCAACGACAAGATGATGTATTTTAACGTCGCAGGTATCATAGAAAAACACAATGTCGGCAAAATCATGCTCTGACGACCGAGCAAACAAAAAAATATCCAAGTAAGGATCCAAGACTTCATGAAGACCCTCGGATATATCATAGAAAATAGGGAGATAGAGATCCAGCTTGTAGAGGAGGATTACACGAGCGTACAATCAGGGGAGATCACCTCAAATTTCAAAAAGAATGCTGCGGAAGATACCGTCAGCGCGATGCTTATTTTGGAAAGAGGATTGAACGACAATAAAAAATCAGCTAGTGAAAAAGAAGAAACTGCTACACCAGAAACTGAAGAAAATATCGCATAA
PROTEIN sequence
Length: 156
MQTNYRKQKCILGIDRGTKYIGLAYALPGSDVVFPIGYILNDKMMYFNVAGIIEKHNVGKIMLGRPSKQKNIQVRIQDFMKTLGYIIENREIEIQLVEEDYTSVQSGEITSNFKKNAAEDTVSAMLILERGLNDNKKSASEKEETATPETEENIA*