ggKbase home page

ACD81_12

Alias: ACD81_268.6239.54

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD81_12_1
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

238..693
-----------------
DNA (456bp)
protein (152aa)
seg (db=Seg db_id=seg from=50 to=65)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
GreA_GreB (db=HMMPfam db_id=PF01272 from=80 to=150 evalue=3.9e-09 interpro_id=IPR001437 interpro_description=Transcription elongation factor, GreA/GreB, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
FKBP-like (db=superfamily db_id=SSF54534 from=77 to=150 evalue=4.7e-09)
ACD81_12_2
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(723..1169)
-----------------
DNA (447bp)
protein (149aa)
acetyltransferase
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=145 evalue=7.1e-25 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=4 to=137 evalue=4.6e-17 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=52 to=125 evalue=5.4e-13 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
ACD81_12_3
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(1182..1775)
-----------------
DNA (594bp)
protein (198aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=11 to=22)
Uncharacterized protein {ECO:0000313|EMBL:KKT43631.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_12_4
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

1909..2394
-----------------
DNA (486bp)
protein (162aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Geobacillus thermoglucosidasius C56-YS93 RepID=D4YCW6_BACTR (db=UNIREF evalue=1.0e-41 bit_score=171.0 identity=62.03 coverage=96.2962962962963)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
ACD81_12_5
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

2401..2607
-----------------
DNA (207bp)
protein (69aa)
XRE family transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=65 evalue=1.2e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=6 to=62 evalue=3.6e-08 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=13 to=61 evalue=1.2e-07 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD81_12_6
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

2616..4400
-----------------
DNA (1785bp)
protein (595aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=352 to=374)
transmembrane_regions (db=TMHMM db_id=tmhmm from=326 to=345)
transmembrane_regions (db=TMHMM db_id=tmhmm from=294 to=316)
ACD81_12_7
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(4383..4481)
-----------------
DNA (99bp)
protein (33aa)
4383..4481 - (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:KKT43626.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_12_8

Not on your lists

comp(4494..5654)
-----------------
DNA (1161bp)
protein (387aa)
leucine isoleucine valine threonine and alanine-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein (db=KEGG evalue=9.0e-12 bit_score=75.1 identity=25.98 coverage=77.7777777777778)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=57)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=66 to=385 evalue=1.7e-33)
no description (db=Gene3D db_id=G3DSA:3.40.50.9600 from=66 to=249 evalue=1.5e-13)
ACD81_12_9
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

5664..6302
-----------------
DNA (639bp)
protein (213aa)
TrmB (db=HMMPfam db_id=PF01978 from=13 to=62 evalue=1.1e-07 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=12 to=62 evalue=2.5e-07)
Uncharacterized protein {ECO:0000313|EMBL:KKT43624.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
Displaying 9 items

View Taxonomy