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ACD81_52

Alias: ACD81_1795.14670.54

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD81_52_1
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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1..186
-----------------
DNA (186bp)
protein (62aa)
1..186 + (rbs_motif=None rbs_spacer=None)
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KKT43187.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_52_2
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(233..1372)
-----------------
DNA (1140bp)
protein (380aa)
extracellular ligand-binding receptor
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=179 to=192)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=31 to=377 evalue=2.9e-53)
ACD81_52_3
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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1477..2325
-----------------
DNA (849bp)
protein (283aa)
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=3.0e-34 bit_score=149.0 identity=32.38 coverage=85.5123674911661)
iclR helix-turn-helix domain protein
seg (db=Seg db_id=seg from=271 to=280)
TrmB (db=HMMPfam db_id=PF01978 from=30 to=97 evalue=1.1e-13 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
ACD81_52_4
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(2377..3111)
-----------------
DNA (735bp)
protein (245aa)
ABC transporter
seg (db=Seg db_id=seg from=96 to=111)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
BRANCHED CHAIN AMINO ACID ABC TRANSPORT (db=HMMPanther db_id=PTHR19222:SF14 from=4 to=244 evalue=4.6e-68)
ACD81_52_5
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(3210..4343)
-----------------
DNA (1134bp)
protein (378aa)
extracellular ligand-binding receptor
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=31 to=377 evalue=9.3e-67)
no description (db=Gene3D db_id=G3DSA:3.40.50.9600 from=32 to=217 evalue=3.4e-36)
ACD81_52_6
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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4456..5211
-----------------
DNA (756bp)
protein (252aa)
iclR helix-turn-helix domain protein
Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHZ5_9BACT (db=UNIREF evalue=2.0e-29 bit_score=132.0 identity=32.79 coverage=96.031746031746)
seg (db=Seg db_id=seg from=151 to=162)
TrmB (db=HMMPfam db_id=PF01978 from=11 to=74 evalue=2.8e-12 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
ACD81_52_7
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(5232..5606)
-----------------
DNA (375bp)
protein (125aa)
hypothetical protein
seg (db=Seg db_id=seg from=13 to=21)
coiled-coil (db=Coil db_id=coil from=15 to=36 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKT43181.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_52_8

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comp(5596..6366)
-----------------
DNA (771bp)
protein (257aa)
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ29_9BACT (db=UNIREF evalue=2.0e-73 bit_score=279.0 identity=51.97 coverage=96.8871595330739)
repressor protein
no description (db=HMMSmart db_id=SM00530 from=4 to=59 evalue=4.7e-15 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=5 to=59 evalue=3.2e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD81_52_9

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comp(6431..7300)
-----------------
DNA (870bp)
protein (290aa)
amino acid ABC transporter
seg (db=Seg db_id=seg from=234 to=245)
seg (db=Seg db_id=seg from=189 to=203)
seg (db=Seg db_id=seg from=137 to=148)
ACD81_52_10
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(7303..8172)
-----------------
DNA (870bp)
protein (290aa)
inner-membrane translocator
seg (db=Seg db_id=seg from=268 to=280)
seg (db=Seg db_id=seg from=228 to=253)
seg (db=Seg db_id=seg from=134 to=159)
ACD81_52_11
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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9604..10347
-----------------
DNA (744bp)
protein (248aa)
Transcriptional regulator, TrmB
TrmB (db=HMMPfam db_id=PF01978 from=9 to=72 evalue=9.5e-10 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=100 evalue=7.2e-08)
Transcriptional regulator, TrmB {ECO:0000313|EMBL:KKT43176.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_52_12

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comp(11648..11800)
-----------------
DNA (153bp)
protein (51aa)
11648..11800 - (rbs_motif=ATAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD24220.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_52_13
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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11896..12483
-----------------
DNA (588bp)
protein (196aa)
seg (db=Seg db_id=seg from=70 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=97 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=82)
ACD81_52_14

Not on your lists

13291..13482
-----------------
DNA (192bp)
protein (64aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD24218.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_52_15
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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13974..14708
-----------------
DNA (735bp)
protein (245aa)
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=2.0e-28 bit_score=129.0 identity=33.33 coverage=95.9183673469388)
iclR helix-turn-helix domain protein
TrmB (db=HMMPfam db_id=PF01978 from=8 to=74 evalue=1.0e-13 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=7 to=94 evalue=3.3e-08)
Displaying 15 items

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