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NECEvent2014_4_3_scaffold_279

Alias: 174_003_scaffold_279

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_3_scaffold_279_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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93..578
DNA (486bp) protein (162aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
Dihydrofolate reductase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XPC1_CLOPE rbh
folA; dihydrofolate reductase
NECEvent2014_4_3_scaffold_279_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(724..2010)
DNA (1287bp) protein (429aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RS98_CLOPF rbh
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EIA18722.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
brnQ; branched-chain amino acid transport system II carrier protein
NECEvent2014_4_3_scaffold_279_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2447..2950)
DNA (504bp) protein (168aa)
Putative lipoprotein n=1 Tax=Clostridium perfringens F262 RepID=H7CRJ0_CLOPF rbh
Putative lipoprotein {ECO:0000313|EMBL:EIA18721.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
lipoprotein
NECEvent2014_4_3_scaffold_279_trna_2
unknown

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comp(3386..3472)
DNA (87bp)
transferRNA
NECEvent2014_4_3_scaffold_279_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3724..4512)
DNA (789bp) protein (263aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=451756
Prolipoprotein diacylglyceryl transferase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RS96_CLOPF rbh
NECEvent2014_4_3_scaffold_279_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4779..5498)
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CWN9_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EIA18719.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
NECEvent2014_4_3_scaffold_279_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5511..6404)
DNA (894bp) protein (298aa)
Putative permease n=3 Tax=Clostridium perfringens RepID=Q0TV28_CLOP1 rbh
permease
Putative permease {ECO:0000313|EMBL:EDT26688.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
NECEvent2014_4_3_scaffold_279_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6407..6991)
DNA (585bp) protein (195aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=H7CRI6_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EIA18717.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
NECEvent2014_4_3_scaffold_279_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7011..7937)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CWP2_CLOPF rbh
cobW; CobW/P47K family protein
CobW/P47K family protein {ECO:0000313|EMBL:EIA18716.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_4_3_scaffold_279_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8125..9321)
DNA (1197bp) protein (399aa)
Alpha toxin n=1 Tax=Clostridium perfringens RepID=Q5PXE6_CLOPF rbh
Alpha toxin {ECO:0000313|EMBL:AAV76024.1}; TaxID=1502 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens.;"
plc; phospholipase C
NECEvent2014_4_3_scaffold_279_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9652..11124
DNA (1473bp) protein (491aa)
UPF0061 protein CJD_A0727 n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V2Y1_CLOPF rbh
UPF0061 protein CJD_A0727 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str
hypothetical protein
NECEvent2014_4_3_scaffold_279_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11239..11901)
DNA (663bp) protein (221aa)
Uncharacterized protein n=3 Tax=Clostridium perfringens RepID=B1R844_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT26714.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
hypothetical protein
NECEvent2014_4_3_scaffold_279_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12010..12375)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=H7CRI1_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EIA18712.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
NECEvent2014_4_3_scaffold_279_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12497..12940)
DNA (444bp) protein (148aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=H7CRI0_CLOPF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26646.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_4_3_scaffold_279_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13018..13449)
DNA (432bp) protein (144aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiace
Cytidine/deoxycytidylate deaminase family protein n=4 Tax=Clostridium perfringens RepID=Q0TV36_CLOP1
cytidine/deoxycytidylate deaminase
NECEvent2014_4_3_scaffold_279_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13452..14717)
DNA (1266bp) protein (422aa)
Hemolysin-related protein n=7 Tax=Clostridium perfringens RepID=H7CRH8_CLOPF rbh
hlyA; hemolysin-like protein
Hemolysin-related protein {ECO:0000313|EMBL:EIA18709.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_4_3_scaffold_279_trna_1
unknown

Not on your lists

comp(14867..14938)
DNA (72bp)
transferRNA
NECEvent2014_4_3_scaffold_279_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14993..15562)
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family n=3 Tax=Clostridium perfringens RepID=Q0SWV8_CLOPS rbh
TetR family transcriptional regulator
Probable transcription regulator {ECO:0000313|EMBL:BAB79735.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (s
Displaying 18 items

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