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NECEvent2014_5_2_scaffold_300

Alias: 175_001_scaffold_300

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_2_scaffold_300_1
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BDP9_9RHOB
translation elongation factor 1A (EF-1A/EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacter
NECEvent2014_5_2_scaffold_300_2
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(257..2323)
DNA (2067bp) protein (689aa)
Elongation factor G n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QGY0_9CLOT rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
fusA1; elongation factor G
NECEvent2014_5_2_scaffold_300_3
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2400..2906)
DNA (507bp) protein (169aa)
30S ribosomal protein S7 n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QH21_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;
rpsG; 30S ribosomal protein S7
NECEvent2014_5_2_scaffold_300_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3018..3395)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=2 Tax=Clostridium RepID=RS12_CLOB8
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
NECEvent2014_5_2_scaffold_300_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3590..7120)
DNA (3531bp) protein (1177aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H649_9CLOT rbh
NECEvent2014_5_2_scaffold_300_6
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7142..10846)
DNA (3705bp) protein (1235aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUU2_9CLOT rbh
NECEvent2014_5_2_scaffold_300_7
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11118..11483)
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQD2_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF43
rplL; 50S ribosomal protein L7/L12
NECEvent2014_5_2_scaffold_300_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11526..12029)
DNA (504bp) protein (168aa)
50S ribosomal protein L10 n=2 Tax=Clostridium botulinum B RepID=B2TIG6_CLOBB
ribosomal L10 family protein
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sul
NECEvent2014_5_2_scaffold_300_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12242..12931)
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EPD5_9CLOT rbh
rplA; ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_5_2_scaffold_300_10
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12984..13409)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F310_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.
rplK; ribosomal protein L11
NECEvent2014_5_2_scaffold_300_11
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13498..14040)
DNA (543bp) protein (181aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QGX0_9CLOT rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
nusG; transcription termination/antitermination factor NusG
NECEvent2014_5_2_scaffold_300_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14052..14279)
DNA (228bp) protein (76aa)
Protein translocase subunit SecE n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q1Q1_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43
secE; preprotein translocase, SecE subunit
NECEvent2014_5_2_scaffold_300_13
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14673..15812)
DNA (1140bp) protein (380aa)
Elongation factor Tu (Fragment) n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEH7_9CLOT rbh
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatu
tuf; elongation factor Tu
NECEvent2014_5_2_scaffold_300_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15883..16524)
DNA (642bp) protein (214aa)
RNA polymerase sigma-H factor n=2 Tax=Clostridium botulinum E RepID=B2UY94_CLOBA rbh
sigH; RNA polymerase factor sigma-70
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EES48702.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str.
NECEvent2014_5_2_scaffold_300_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16569..17108)
DNA (540bp) protein (180aa)
Putative Tetracycline resistance protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F308_9CLOT
yacP-like NYN domain protein
YacP-like NYN domain protein {ECO:0000313|EMBL:AIY84968.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sull
NECEvent2014_5_2_scaffold_300_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17122..17937)
DNA (816bp) protein (272aa)
Putative Probable tRNA/rRNA methyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUT5_9CLOT rbh
RNA methyltransferase {ECO:0000313|EMBL:KJU70552.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
RNA 2'-O ribose methyltransferase substrate binding family protein
NECEvent2014_5_2_scaffold_300_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17951..18373)
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
mrnC; mini-ribonuclease 3 (EC:3.1.26.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H643_9CLOT
NECEvent2014_5_2_scaffold_300_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18426..19838)
DNA (1413bp) protein (471aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=3 Tax=Clostridium botulinum RepID=SYC_CLOBA rbh
NECEvent2014_5_2_scaffold_300_19
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19855..21570)
DNA (1716bp) protein (572aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:000025
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QD37_9CLOT rbh
NECEvent2014_5_2_scaffold_300_20
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21893..22573)
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F303_9CLOT rbh
NECEvent2014_5_2_scaffold_300_21
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22586..23680)
DNA (1095bp) protein (365aa)
PilT protein domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYX6_9CLOT rbh
PilT protein domain protein {ECO:0000313|EMBL:EHI97105.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PIN domain protein
NECEvent2014_5_2_scaffold_300_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23961..24353
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIF2_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY80831.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
NECEvent2014_5_2_scaffold_300_23
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24409..25473)
DNA (1065bp) protein (355aa)
DNA integrity scanning protein DisA n=1 Tax=Clostridium colicanis 209318 RepID=N9XM80_9CLOT rbh
DNA integrity scanning protein DisA {ECO:0000256|HAMAP-Rule:MF_01438, ECO:0000256|SAAS:SAAS00010389}; Cyclic di-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01438}; Diadenylate cyclase {ECO:0000256|HAMAP-R
disA; DNA integrity scanning protein DisA
NECEvent2014_5_2_scaffold_300_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25489..26856)
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Clostridium colicanis 209318 RepID=N9XY13_9CLOT rbh
radA; DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sulliva
Displaying 24 items

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