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NECEvent2014_5_3_scaffold_174

Alias: 175_002_scaffold_174

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_174_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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439..1014
DNA (576bp) protein (192aa)
Uncharacterized protein n=56 Tax=Staphylococcus epidermidis RepID=Q5HQ93_STAEQ rbh
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Uncharacterized protein {ECO:0000313|EMBL:AAW54019.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
NECEvent2014_5_3_scaffold_174_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1028..2431
DNA (1404bp) protein (468aa)
ABC transporter, ATP-binding protein n=3 Tax=Staphylococcus epidermidis RepID=J0E5X6_STAEP rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE59282.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
NECEvent2014_5_3_scaffold_174_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2424..3230
DNA (807bp) protein (269aa)
Cobalt transport protein n=39 Tax=Staphylococcus epidermidis RepID=D1WPE3_STAEP rbh
hypothetical protein
Cobalt transport protein {ECO:0000313|EMBL:EFE59283.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_174_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3363..4604)
DNA (1242bp) protein (414aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
Phosphoribosylamine--glycine ligase n=34 Tax=Staphylococcus epidermidis RepID=C5Q884_STAEP rbh
NECEvent2014_5_3_scaffold_174_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4630..6108)
DNA (1479bp) protein (493aa)
IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=36 Tax=Staphylococcus epidermidis RepID=C5Q883_STAEP rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" sourc
NECEvent2014_5_3_scaffold_174_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6125..6691)
DNA (567bp) protein (189aa)
Phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_019
Phosphoribosylglycinamide formyltransferase n=50 Tax=Staphylococcus epidermidis RepID=PUR3_STAEQ rbh
NECEvent2014_5_3_scaffold_174_7

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comp(6691..7722)
DNA (1032bp) protein (344aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1) rbh
Phosphoribosylformylglycinamidine cyclo-ligase n=45 Tax=Staphylococcus epidermidis RepID=PUR5_STAEQ rbh
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000313|EMBL:ETJ20277.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_174_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7715..9199)
DNA (1485bp) protein (495aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14) rbh
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
Amidophosphoribosyltransferase n=40 Tax=Staphylococcus epidermidis RepID=C5Q880_STAEP rbh
NECEvent2014_5_3_scaffold_174_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9178..11367)
DNA (2190bp) protein (730aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000255|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000255|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000255|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase 2 n=11 Tax=Staphylococcus epidermidis RepID=PURL_STAES rbh
phosphoribosylformylglycinamidine synthase II rbh
NECEvent2014_5_3_scaffold_174_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11360..12031)
DNA (672bp) protein (224aa)
Phosphoribosylformylglycinamidine synthase,glutamine amidotransferase subunit (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000255|HAMAP-Rule:MF_00421}; Short=FGAM synthase {ECO:0000255|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000255|HAMAP-Rule:MF_00421};; Formyl
Phosphoribosylformylglycinamidine synthase 1 n=50 Tax=Staphylococcus epidermidis RepID=PURQ_STAEQ rbh
NECEvent2014_5_3_scaffold_174_11

Not on your lists

comp(12033..12293)
DNA (261bp) protein (87aa)
Phosphoribosylformylglycinamidine synthase, PurS subunit (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase, PurS protein n=67 Tax=Staphylococcus epidermidis RepID=Q5HQA3_STAEQ
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000313|EMBL:ETJ20281.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome
NECEvent2014_5_3_scaffold_174_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12293..12997)
DNA (705bp) protein (235aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};;
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=49 Tax=Staphylococcus epidermidis RepID=PUR7_STAEQ rbh
NECEvent2014_5_3_scaffold_174_13

Not on your lists

comp(12998..14125)
DNA (1128bp) protein (376aa)
N5-carboxyaminoimidazole ribonucleotide synthase n=47 Tax=Staphylococcus epidermidis RepID=PURK_STAES rbh
phosphoribosylaminoimidazole carboxylase ATPase subunit
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000313|EMBL:ETJ20283.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_174_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14112..14594)
DNA (483bp) protein (161aa)
N5-carboxyaminoimidazole ribonucleotide mutase n=22 Tax=Staphylococcus epidermidis RepID=E6JLC9_STAEP rbh
hypothetical protein
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
NECEvent2014_5_3_scaffold_174_15

Not on your lists

14799..15659
DNA (861bp) protein (287aa)
Bifunctional protein FolD n=37 Tax=Staphylococcus epidermidis RepID=FOLD_STAES rbh
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000313|EMBL:ETJ20285.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_174_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16032..16349
DNA (318bp) protein (106aa)
Chitinase-related protein n=76 Tax=Staphylococcus epidermidis RepID=Q5HQA8_STAEQ
Chitinase B
Uncharacterized protein {ECO:0000313|EMBL:EES36485.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
NECEvent2014_5_3_scaffold_174_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16888..18012
DNA (1125bp) protein (375aa)
quinol oxidase polypeptide II QoxA (EC:1.9.3.-)
Cytochrome aa3 quinol oxidase, subunit II {ECO:0000313|EMBL:EES36484.1}; EC=1.10.3.- {ECO:0000313|EMBL:EES36484.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;"
Probable quinol oxidase subunit 2 n=77 Tax=Staphylococcus epidermidis RepID=QOX2_STAEQ rbh
NECEvent2014_5_3_scaffold_174_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18012..20000
DNA (1989bp) protein (663aa)
quinol oxidase polypeptide I QoxB (EC:1.9.3.-)
Probable quinol oxidase subunit 1; EC=1.10.3.-;; Quinol oxidase polypeptide I; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (st
Probable quinol oxidase subunit 1 n=57 Tax=Staphylococcus epidermidis RepID=QOX1_STAEQ rbh
NECEvent2014_5_3_scaffold_174_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19990..20595
DNA (606bp) protein (202aa)
quinol oxidase polypeptide III QoxC (EC:1.9.3.-)
Cytochrome aa3 quinol oxidase, subunit III {ECO:0000313|EMBL:EES36482.1}; EC=1.10.3.- {ECO:0000313|EMBL:EES36482.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;"
Probable quinol oxidase subunit 3 n=79 Tax=Staphylococcus epidermidis RepID=QOX3_STAEQ rbh
NECEvent2014_5_3_scaffold_174_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20592..20882
DNA (291bp) protein (97aa)
quinol oxidase polypeptide IV QoxD (EC:1.9.3.-)
Probable quinol oxidase subunit 4; EC=1.10.3.-;; Quinol oxidase polypeptide IV; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (s
Probable quinol oxidase subunit 4 n=57 Tax=Staphylococcus epidermidis RepID=QOX4_STAEQ
NECEvent2014_5_3_scaffold_174_21

Not on your lists

21048..21977
DNA (930bp) protein (310aa)
Inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.1)
Inosine-uridine preferring nucleoside hydrolase family protein n=49 Tax=Staphylococcus epidermidis RepID=Q5HQB3_STAEQ rbh
Putative ribosylpyrimidine nucleosidase {ECO:0000313|EMBL:ETJ20291.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_174_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22134..23336)
DNA (1203bp) protein (401aa)
Fmt protein n=29 Tax=Staphylococcus epidermidis RepID=Q5HQB4_STAEQ rbh
FmtA protein involved in methicillin resistance # affects cell wall cross-linking and amidation rbh
Fmt protein {ECO:0000313|EMBL:AAW53973.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
NECEvent2014_5_3_scaffold_174_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24143..24559
DNA (417bp) protein (139aa)
Cell envelope-like function transcriptional attenuator common domain protein n=2 Tax=Staphylococcus epidermidis RepID=F9LJY4_STAEP
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)
Transcriptional regulator, putative {ECO:0000313|EMBL:AAW53972.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35
Displaying 23 items

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