ggKbase home page

NECEvent2014_5_3_scaffold_293

Alias: 175_002_scaffold_293

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_293_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

48..203
DNA (156bp) protein (52aa)
IS1272-like transposase, degenerate n=27 Tax=Staphylococcus epidermidis RepID=Q5HN79_STAEQ
truncated IS1272 transposase
IS1272, transposase {ECO:0000313|EMBL:EFE60047.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_293_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

413..1543
DNA (1131bp) protein (377aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=176279 species
Putative iron-sulfur cluster-binding protein n=3 Tax=Staphylococcus epidermidis RepID=F9LJM3_STAEP rbh
Iron-sulfur cluster-binding protein
NECEvent2014_5_3_scaffold_293_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1540..2010
DNA (471bp) protein (157aa)
tRNA (cytosine34-2'-O-)-methyltransferase (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAM
RNA methyltransferase n=51 Tax=Staphylococcus epidermidis RepID=V6QAY7_STAEP rbh
NECEvent2014_5_3_scaffold_293_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2168..2767
DNA (600bp) protein (200aa)
Glucosamine-6-phosphate isomerase family protein n=31 Tax=Staphylococcus epidermidis RepID=Q5HN82_STAEQ rbh
glucosamine-6-phosphate isomerase family protein
Glucosamine-6-phosphate isomerase family protein {ECO:0000313|EMBL:EFE60050.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M2
NECEvent2014_5_3_scaffold_293_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2788..2970
DNA (183bp) protein (61aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HN83_STAEQ
Hypothetical protein SAV1853
Uncharacterized protein {ECO:0000313|EMBL:EFE60051.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_293_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3126..3530
DNA (405bp) protein (135aa)
Uncharacterized protein n=38 Tax=Staphylococcus epidermidis RepID=Q5HN84_STAEQ
Hypothetical protein SAV1852
Uncharacterized protein {ECO:0000313|EMBL:ETJ14709.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_5_3_scaffold_293_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3715..5100
DNA (1386bp) protein (462aa)
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=525375 species="Bacteria; Firmi
Fumarate hydratase class II n=49 Tax=Staphylococcus epidermidis RepID=FUMC_STAEQ rbh
NECEvent2014_5_3_scaffold_293_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5461..6285)
DNA (825bp) protein (275aa)
Ribosomal large subunit pseudouridine synthase, RluD subfamily n=45 Tax=Staphylococcus epidermidis RepID=Q5HN86_STAEQ rbh
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type
Ribosomal large subunit pseudouridine synthase, RluD subfamily {ECO:0000313|EMBL:AAW54714.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
NECEvent2014_5_3_scaffold_293_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6444..7577
DNA (1134bp) protein (378aa)
Nitrate/nitrite sensor protein (EC:2.7.3.-)
Two-component sensor histidine kinase-like protein n=48 Tax=Staphylococcus epidermidis RepID=Q8CRX7_STAES rbh
Histidine kinase {ECO:0000313|EMBL:EFE60055.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_293_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7570..8193
DNA (624bp) protein (208aa)
DNA-binding response regulator, LuxR family n=77 Tax=Staphylococcus epidermidis RepID=Q5HN88_STAEQ rbh
Two-component response regulator-like protein
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESV18735.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
NECEvent2014_5_3_scaffold_293_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8464..8928
DNA (465bp) protein (155aa)
Transcriptional regulator, Cro/CI family n=79 Tax=Staphylococcus epidermidis RepID=Q5HN89_STAEQ rbh
HTH domain protein SA1665, binds to mecA promoter region
Transcriptional regulator, Cro/CI family {ECO:0000313|EMBL:EES35839.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
NECEvent2014_5_3_scaffold_293_12

Not on your lists

9107..10240
DNA (1134bp) protein (378aa)
Uncharacterized protein n=39 Tax=Staphylococcus epidermidis RepID=C5QA45_STAEP rbh
Uncharacterized protein {ECO:0000313|EMBL:ETJ20098.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
NECEvent2014_5_3_scaffold_293_13

Not on your lists

10313..10657
DNA (345bp) protein (115aa)
UPF0342 protein SERP1381 n=78 Tax=Staphylococcus epidermidis RepID=Y1381_STAEQ
putative transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ETJ20097.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_293_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10927..12123
DNA (1197bp) protein (399aa)
DNA repair exonuclease family protein n=45 Tax=Staphylococcus epidermidis RepID=Q5HN92_STAEQ rbh
hypothetical protein
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFE60060.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).
NECEvent2014_5_3_scaffold_293_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12113..15052
DNA (2940bp) protein (980aa)
Uncharacterized protein n=8 Tax=Staphylococcus epidermidis RepID=H3V269_STAEP rbh
DNA double-strand break repair rad50 ATPase
Uncharacterized protein {ECO:0000313|EMBL:EFE60061.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_293_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15049..15990
DNA (942bp) protein (314aa)
Cmp-binding-factor 1 n=41 Tax=Staphylococcus epidermidis RepID=Q5HN94_STAEQ rbh
CMP-binding-factor 1
HD domain protein {ECO:0000313|EMBL:EFE60062.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Displaying 16 items

View Taxonomy