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NECEvent2014_8_2_scaffold_197

Alias: 178_002_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_197_trna_9
unknown

Not on your lists

comp(5..76)
DNA (72bp)
transferRNA
NECEvent2014_8_2_scaffold_197_1
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

214..540
DNA (327bp) protein (109aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1R8_CLOBU
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1523156 species="Bacteria; Firmicutes; Clostri
single stranded DNA-binding protein
NECEvent2014_8_2_scaffold_197_trna_8
unknown

Not on your lists

comp(776..847)
DNA (72bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_7
unknown

Not on your lists

comp(1028..1099)
DNA (72bp)
transferRNA
NECEvent2014_8_2_scaffold_197_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1280..2785)
DNA (1506bp) protein (502aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysS; lysine--tRNA ligase LysS (EC:6.1.1.6)
Lysine--tRNA ligase n=4 Tax=Clostridium butyricum RepID=B1R1R9_CLOBU rbh
NECEvent2014_8_2_scaffold_197_3
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2800..3285)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=4 Tax=Clostridium butyricum RepID=B1R1S0_CLOBU rbh
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1523156 species="Bacteri
greA1; transcription elongation factor GreA
NECEvent2014_8_2_scaffold_197_4
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3632..4597)
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clost
dus; tRNA-dihydrouridine synthase 1 (EC:1.-.-.-)
tRNA-dihydrouridine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J5Q1_CLOBU rbh
NECEvent2014_8_2_scaffold_197_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4605..5387)
DNA (783bp) protein (261aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=4 Tax=Clostridium butyricum RepID=B1R1S2_CLOBU rbh
pantothenate kinase
NECEvent2014_8_2_scaffold_197_6
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5516..7186)
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1523155 sp
fhs; formate--tetrahydrofolate ligase Fhs (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K1B4_CLOBU rbh
NECEvent2014_8_2_scaffold_197_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7467..9272)
DNA (1806bp) protein (602aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
ftsH1; ATP-dependent zinc metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACE2_CLOBU rbh
NECEvent2014_8_2_scaffold_197_8
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9334..9873)
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1R1S6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83345.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypoxanthine phosphoribosyltransferase
NECEvent2014_8_2_scaffold_197_9
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9875..11254)
DNA (1380bp) protein (460aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.19)
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AAM9_CLOBU rbh
NECEvent2014_8_2_scaffold_197_10
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11403..13799)
DNA (2397bp) protein (799aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E n=2 Tax=Clostridium butyricum RepID=M8K9F2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83336.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_8_2_scaffold_197_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14213..15151)
DNA (939bp) protein (313aa)
Malonate transporter n=2 Tax=Clostridium butyricum RepID=M8K1B8_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83333.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
malate transporter
NECEvent2014_8_2_scaffold_197_trna_6
unknown

Not on your lists

comp(15238..15323)
DNA (86bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_5
unknown

Not on your lists

comp(15342..15414)
DNA (73bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_4
unknown

Not on your lists

comp(15437..15522)
DNA (86bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_3
unknown

Not on your lists

comp(15532..15605)
DNA (74bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_2
unknown

Not on your lists

comp(15614..15686)
DNA (73bp)
transferRNA
NECEvent2014_8_2_scaffold_197_trna_1
unknown

Not on your lists

comp(15711..15796)
DNA (86bp)
transferRNA
NECEvent2014_8_2_scaffold_197_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16027..16431)
DNA (405bp) protein (135aa)
RNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1T0_CLOBU
RNA binding protein, contains ribosomal protein S1 domain {ECO:0000313|EMBL:KJZ84730.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
RNA binding protein
NECEvent2014_8_2_scaffold_197_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16572..16868)
DNA (297bp) protein (99aa)
Septum formation initiator n=2 Tax=Clostridium butyricum RepID=M8JG03_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83344.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
septum formation initiator
NECEvent2014_8_2_scaffold_197_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16942..17337)
DNA (396bp) protein (132aa)
Spore cortex biosynthesis protein YabQ n=3 Tax=Clostridium butyricum RepID=B1R1T2_CLOBU
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:ENZ29594.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
yabQ; spore cortex biosynthesis protein YabQ
NECEvent2014_8_2_scaffold_197_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17347..17640)
DNA (294bp) protein (98aa)
Sporulation protein YabP n=4 Tax=Clostridium butyricum RepID=B1R1T3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84738.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
YabP family protein
NECEvent2014_8_2_scaffold_197_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17819..18079)
DNA (261bp) protein (87aa)
S4 domain protein n=4 Tax=Clostridium butyricum RepID=B1R1T4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
NECEvent2014_8_2_scaffold_197_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18144..18419)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Clostridium RepID=U5MP25_CLOSA
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:ENZ29597.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_8_2_scaffold_197_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18637..20088)
DNA (1452bp) protein (484aa)
MazG family protein n=4 Tax=Clostridium butyricum RepID=B1R1T6_CLOBU rbh
MazG family protein {ECO:0000313|EMBL:ENZ29598.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
MazG family protein
NECEvent2014_8_2_scaffold_197_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20104..21642)
DNA (1539bp) protein (513aa)
Stage V sporulation protein B n=3 Tax=Clostridium butyricum RepID=B1R1T7_CLOBU rbh
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEP52558.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
spoVB1; stage V sporulation protein B
NECEvent2014_8_2_scaffold_197_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21767..22318)
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=4 Tax=Clostridium butyricum RepID=B1R1T8_CLOBU rbh
Stage V sporulation protein T {ECO:0000313|EMBL:ENZ29600.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
spoVT; stage V sporulation protein T
NECEvent2014_8_2_scaffold_197_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22524..23555)
DNA (1032bp) protein (344aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
prsA1; foldase protein PrsA (EC:5.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9YPN4_CLOBU rbh
Displaying items 1-30 of 37 in total

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