ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %

Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 601-650 of 305424 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_3_scaffold_404971 Species: Microbispora sp. ATCC PTA-5024 (50%)	2	1448 bp	73.34	6.76	105.87
13_1_20cm_3_scaffold_189405 Species: Opitutaceae bacterium TAV1 (50%)	2	1312 bp	59.30	3.25	105.87
13_1_20cm_3_scaffold_206455 Species: Microvirga lotononidis (50%)	2	1261 bp	61.78	13.54	105.87
13_1_20cm_3_scaffold_386034 Species: Cystobacter violaceus (50%)	2	1193 bp	70.33	4.84	105.87
13_1_20cm_3_scaffold_279525 Species: Methyloglobulus morosus (50%)	2	1057 bp	53.83	3.56	105.87
13_1_20cm_3_scaffold_188546	3	1315 bp	57.34	2.48	105.86
13_1_20cm_3_scaffold_272218 Domain: Bacteria (66.67%)	3	1077 bp	64.07	11.42	105.85
13_1_20cm_3_scaffold_182168 Species: Streptomyces xiamenensis (50%)	2	1335 bp	73.86	7.90	105.84
13_1_20cm_3_scaffold_204291 Species: Frankia alni (50%)	2	1267 bp	72.53	5.55	105.84
13_1_20cm_3_scaffold_249123 Species: Conexibacter woesei (50%)	4	2109 bp	73.49	6.43	105.83
13_1_20cm_3_scaffold_397590 Species: Chthoniobacter flavus (100%)	2	1372 bp	56.78	6.04	105.83
13_1_20cm_3_scaffold_203315 Species: Conexibacter woesei (50%)	2	1270 bp	69.06	6.52	105.83
13_1_20cm_3_scaffold_257801 Phylum: Proteobacteria (66.67%)	3	1117 bp	50.85	3.15	105.82
13_1_20cm_3_scaffold_161471 Species: Patulibacter medicamentivorans (50%)	2	1412 bp	73.02	4.09	105.81
13_1_20cm_3_scaffold_133712	3	1534 bp	50.20	10.14	105.80
13_1_20cm_3_scaffold_195465 Phylum: Rokubacteria (66.67%)	3	1293 bp	70.84	4.27	105.80
13_1_20cm_3_scaffold_195478 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1293 bp	66.90	4.66	105.80
13_1_20cm_3_scaffold_295404 Species: uncultured bacterium (50%)	2	1018 bp	58.35	5.92	105.80
13_1_20cm_3_scaffold_295210 Species: Methylomicrobium album (50%)	2	1018 bp	57.66	7.15	105.80
13_1_20cm_3_scaffold_295237 Species: RBG_16_Betaproteobacteria_66_20_curated (66.67%)	3	1018 bp	66.90	4.44	105.80
13_1_20cm_3_scaffold_126333 Domain: Bacteria (75%)	4	2192 bp	74.22	3.32	105.79
13_1_20cm_3_scaffold_123544 Class: Actinobacteria (66.67%)	3	1588 bp	67.76	5.06	105.79
13_1_20cm_3_scaffold_218033 Species: Mesorhizobium sp. LSJC280B00 (50%)	2	1228 bp	61.81	4.91	105.78
13_1_20cm_3_scaffold_96391 Species: Conexibacter woesei (100%)	3	1767 bp	67.35	4.97	105.77
13_1_20cm_3_scaffold_407954 Species: Thermomonospora curvata (50%)	2	1371 bp	74.18	3.48	105.76
13_1_20cm_3_scaffold_202793 Species: Conexibacter woesei (66.67%)	3	1271 bp	66.64	4.54	105.74
13_1_20cm_3_scaffold_185378 Species: Desulfovibrio sp. X2 (50%)	2	1325 bp	67.32	6.63	105.74
13_1_20cm_3_scaffold_245433 Order: Pseudonocardiales (66.67%)	3	1152 bp	70.40	4.36	105.73
13_1_20cm_3_scaffold_288758 Species: Ktedonobacter racemifer (50%)	2	1033 bp	54.21	7.05	105.71
13_1_20cm_3_scaffold_236255 Domain: Bacteria (100%)	3	2123 bp	54.22	5.56	105.70
13_1_20cm_3_scaffold_349684 Species: Mycobacterium smegmatis (50%)	2	1439 bp	71.65	7.85	105.70
13_1_20cm_3_scaffold_281099 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1053 bp	66.10	8.82	105.70
13_1_20cm_3_scaffold_249241 Species: Thermus oshimai (50%)	2	1141 bp	72.57	7.92	105.70
13_1_20cm_3_scaffold_158947 Domain: Bacteria (66.67%)	3	1422 bp	73.21	6.18	105.70
13_1_20cm_3_scaffold_287705 Species: Streptomyces rimosus (50%)	2	1036 bp	65.06	4.12	105.70
13_1_20cm_3_scaffold_267459 Species: Patulibacter medicamentivorans (50%)	2	1090 bp	73.67	5.53	105.69
13_1_20cm_3_scaffold_280285 Species: R_Ignavibacteria_55_14 (50%)	2	1056 bp	69.41	17.59	105.68
13_1_20cm_3_scaffold_192752 Species: Pyrinomonas methylaliphatogenes (50%)	2	2013 bp	54.99	11.35	105.66
13_1_20cm_3_scaffold_120096 Domain: Bacteria (100%)	3	1607 bp	61.36	5.78	105.66
13_1_20cm_3_scaffold_214359 Species: R_Acidobacteria_67_28 (66.67%)	3	1238 bp	56.06	3.85	105.65
13_1_20cm_3_scaffold_271375 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1079 bp	67.56	3.49	105.65
13_1_20cm_3_scaffold_414530 Phylum: Gemmatimonadetes (66.67%)	3	1170 bp	63.59	3.00	105.64
13_1_20cm_3_scaffold_238904 Species: R_Rokubacteria_68_19 (50%)	2	1170 bp	55.98	7.94	105.64
13_1_20cm_3_scaffold_64528 Domain: Bacteria (80%)	5	2093 bp	67.22	6.48	105.64
13_1_20cm_3_scaffold_117920 Species: Chthoniobacter flavus (66.67%)	3	2005 bp	58.15	7.89	105.64
13_1_20cm_3_scaffold_68372 Species: Thiocapsa marina (50%)	2	2042 bp	75.32	3.56	105.63
13_1_20cm_3_scaffold_150542 Species: Terrabacter sp. 28 (50%)	2	1457 bp	63.14	4.82	105.63
13_1_20cm_3_scaffold_168025 Phylum: Rokubacteria (66.67%)	3	1386 bp	71.28	4.89	105.63
13_1_20cm_3_scaffold_492368 Species: Conexibacter woesei (50%)	2	1227 bp	71.07	4.70	105.62
13_1_20cm_3_scaffold_244176 Domain: Bacteria (66.67%)	3	1156 bp	71.80	3.69	105.62

Displaying items 601-650 of 305424 in total

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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