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13_1_20cm_3_UNK

In projects: 13_1_20CM_3  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %
Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 651-700 of 305424 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_3_scaffold_187386
Species: Patulibacter medicamentivorans (66.67%)
3 1318 bp 70.03 5.71 105.62
13_1_20cm_3_scaffold_281438 4 1052 bp 64.83 3.82 105.61
13_1_20cm_3_scaffold_461021
Species: Mycobacterium chelonae (50%)
2 1284 bp 74.22 6.45 105.61
13_1_20cm_3_scaffold_353313
Species: Pyrinomonas methylaliphatogenes (66.67%)
3 1463 bp 62.41 10.29 105.60
13_1_20cm_3_scaffold_255116
Phylum: Acidobacteria (66.67%)
3 1125 bp 65.24 2.68 105.60
13_1_20cm_3_scaffold_161447
Domain: Bacteria (66.67%)
3 1412 bp 72.45 4.98 105.60
13_1_20cm_3_scaffold_267030
Species: Pyrinomonas methylaliphatogenes (50%)
2 1091 bp 52.15 3.22 105.59
13_1_20cm_3_scaffold_110259 3 1668 bp 64.81 5.12 105.58
13_1_20cm_3_scaffold_227555
Species: delta proteobacterium NaphS2 (50%)
2 1202 bp 70.13 5.43 105.57
13_1_20cm_3_scaffold_62794
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
2 2117 bp 67.88 5.57 105.57
13_1_20cm_3_scaffold_293042 2 1023 bp 53.57 4.17 105.57
13_1_20cm_3_scaffold_272155
Species: RBG_16_Anaeromyxobacter_69_14_curated (66.67%)
3 1077 bp 48.93 2.80 105.57
13_1_20cm_3_scaffold_270968
Species: uncultured Thiohalocapsa sp. PB-PSB1 (100%)
2 1080 bp 56.94 3.72 105.56
13_1_20cm_3_scaffold_277189
Species: uncultured bacterium (50%)
2 1063 bp 57.48 8.97 105.55
13_1_20cm_3_scaffold_244766
Species: Thermomonospora curvata (50%)
2 1154 bp 71.23 3.26 105.55
13_1_20cm_3_scaffold_290451
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1029 bp 72.59 20.00 105.54
13_1_20cm_3_scaffold_339293
Species: Fimbriimonas ginsengisoli (50%)
2 1157 bp 54.80 4.77 105.53
13_1_20cm_3_scaffold_166463
Species: Ktedonobacter racemifer (50%)
2 1393 bp 66.69 4.32 105.53
13_1_20cm_3_scaffold_289400
Species: Acidobacterium capsulatum (50%)
2 1032 bp 66.96 3.65 105.52
13_1_20cm_3_scaffold_103614
Species: Frankia sp. CpI1-S (66.67%)
3 2573 bp 70.93 7.71 105.52
13_1_20cm_3_scaffold_175343
Domain: Bacteria (66.67%)
3 1359 bp 57.10 11.08 105.52
13_1_20cm_3_scaffold_296378 2 1015 bp 69.06 3.71 105.52
13_1_20cm_3_scaffold_112751 3 1652 bp 55.33 7.44 105.51
13_1_20cm_3_scaffold_203083
Species: RBG_16_Actinobacteria_68_12_curated (66.67%)
3 1271 bp 68.92 5.53 105.51
13_1_20cm_3_scaffold_249455
Order: Myxococcales (100%)
3 2235 bp 69.04 4.83 105.50
13_1_20cm_3_scaffold_179451
Species: RBG_19FT_COMBO_Armatimonadetes_69_19_curated (50%)
2 1345 bp 68.55 3.73 105.50
13_1_20cm_3_scaffold_112291
Species: Rubrobacter radiotolerans (50%)
2 1655 bp 73.90 8.34 105.50
13_1_20cm_3_scaffold_280390
Domain: Bacteria (66.67%)
3 1055 bp 68.53 4.52 105.50
13_1_20cm_3_scaffold_335254
Species: Microbispora sp. ATCC PTA-5024 (50%)
2 1601 bp 70.27 3.45 105.50
13_1_20cm_3_scaffold_240394
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 2767 bp 73.98 6.71 105.49
13_1_20cm_3_scaffold_142448
Species: Ktedonobacter racemifer (100%)
2 1493 bp 59.88 6.22 105.49
13_1_20cm_3_scaffold_84714
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
4 2622 bp 61.78 13.21 105.49
13_1_20cm_3_scaffold_287077
Species: Nocardioides sp. JS614 (66.67%)
3 1038 bp 66.47 3.39 105.49
13_1_20cm_3_scaffold_178717
Species: Gemmatimonadetes bacterium KBS708 (66.67%)
3 1348 bp 64.09 2.79 105.49
13_1_20cm_3_scaffold_272868
Species: RBG_16_RIF_CHLX_69_14_curated (50%)
2 1075 bp 69.49 2.80 105.49
13_1_20cm_3_scaffold_272882
Species: marine sediment metagenome (50%)
2 1075 bp 72.09 3.97 105.49
13_1_20cm_3_scaffold_400748
Species: GWA2_Gallionellales_54_124_curated (50%)
2 1476 bp 64.63 4.25 105.49
13_1_20cm_3_scaffold_265663
Species: Phaeospirillum fulvum (50%)
2 1095 bp 55.80 5.73 105.48
13_1_20cm_3_scaffold_90873 2 1812 bp 57.34 4.02 105.46
13_1_20cm_3_scaffold_257330
Species: Actinoplanes utahensis (50%)
2 1118 bp 74.33 4.49 105.46
13_1_20cm_3_scaffold_186877
Species: CG_Mariprof_04 (50%)
2 1320 bp 63.86 2.85 105.46
13_1_20cm_3_scaffold_244379
Domain: Bacteria (66.67%)
3 1155 bp 61.56 4.56 105.46
13_1_20cm_3_scaffold_376076
Species: Chthoniobacter flavus (50%)
2 1394 bp 69.23 3.42 105.45
13_1_20cm_3_scaffold_73345
Species: Candidatus Koribacter versatilis (66.67%)
3 1983 bp 54.87 6.96 105.45
13_1_20cm_3_scaffold_105576
Domain: Bacteria (66.67%)
3 2151 bp 67.69 7.70 105.44
13_1_20cm_3_scaffold_121646
Order: Micromonosporales (66.67%)
3 2467 bp 72.03 9.87 105.43
13_1_20cm_3_scaffold_297371
Species: Pusillimonas sp. T7-7 (50%)
2 1013 bp 70.78 4.71 105.43
13_1_20cm_3_scaffold_274918
Species: Candidatus Koribacter versatilis (50%)
2 1070 bp 58.79 9.15 105.42
13_1_20cm_3_scaffold_183186
Species: RBG_16_Actinobacteria_68_12_curated (100%)
3 1332 bp 68.24 6.78 105.40
13_1_20cm_3_scaffold_206936
Domain: Bacteria (66.67%)
3 1998 bp 69.17 4.27 105.40
Displaying items 651-700 of 305424 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.