ggKbase home page

NECEvent2014_10_1_scaffold_55

Alias: Felix_001_scaffold_55

Search features with annotation key words

Displaying items 31-53 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_10_1_scaffold_55_31
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27698..28099)
DNA (402bp) protein (134aa)
Preprotein translocase, YajC subunit n=2 Tax=Lactobacillus crispatus RepID=C7XLK1_9LACO
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EEU18833.1}; TaxID=575595 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus crisp
yajC; protein translocase subunit yajc
NECEvent2014_10_1_scaffold_55_32
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28150..29169)
DNA (1020bp) protein (340aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=748671 species="Bacteria; Firmicutes; Bacilli; Lactobacillale
Holliday junction ATP-dependent DNA helicase RuvB n=2 Tax=Lactobacillus crispatus RepID=D5H1H0_LACCS rbh
ruvB; holliday junction ATP-dependent DNA helicase ruvb rbh
NECEvent2014_10_1_scaffold_55_33
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29209..29796)
DNA (588bp) protein (196aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Lactobacillus crispatus (strain ST1) RepID=D5H1G9_LACCS rbh
ruvA; holliday junction ATP-dependent DNA helicase ruva rbh
NECEvent2014_10_1_scaffold_55_34
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29796..31721)
DNA (1926bp) protein (642aa)
DNA mismatch repair protein MutL n=1 Tax=Lactobacillus crispatus EM-LC1 RepID=V5EJ51_9LACO rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1328863 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillu
mutL; DNA mismatch repair protein mutl rbh
NECEvent2014_10_1_scaffold_55_35
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31721..34294)
DNA (2574bp) protein (858aa)
DNA mismatch repair protein MutS n=3 Tax=Lactobacillus crispatus RepID=D4FG26_9LACO rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=440496 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
mutS1; DNA mismatch repair protein muts rbh
NECEvent2014_10_1_scaffold_55_36
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(34556..36181)
DNA (1626bp) protein (542aa)
60 kDa chaperonin n=12 Tax=Bacteria RepID=D5H1G6_LACCS rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=748671 speci
groEL; 60 kda chaperonin
NECEvent2014_10_1_scaffold_55_37
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(36235..36519)
DNA (285bp) protein (95aa)
10 kDa chaperonin n=11 Tax=Lactobacillus crispatus RepID=D5H1G5_LACCS
groES; 10 kda chaperonin
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=575595 speci
NECEvent2014_10_1_scaffold_55_38
Lactobacillus helveticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(36699..37229)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Lactobacillus helveticus R0052 RepID=J3X9L8_LACHE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFR21439.1}; TaxID=880633 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helveticus R0052.;
NECEvent2014_10_1_scaffold_55_39
Lactobacillus amylovorus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(37802..39223)
DNA (1422bp) protein (474aa)
Transposase n=2 Tax=Lactobacillus RepID=E4SIJ7_LACAR rbh
transposase rbh
Transposase {ECO:0000313|EMBL:ADQ58996.1}; TaxID=695560 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus amylovorus (strain GRL 1112).;
NECEvent2014_10_1_scaffold_55_40
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(39339..41288)
DNA (1950bp) protein (650aa)
PTS system sucrose-specific IIBC component {ECO:0000313|EMBL:EFQ44272.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFQ44272.1};; TaxID=440496 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacilla
PTS system, sucrose-specific IIABC component n=9 Tax=Lactobacillus crispatus RepID=D5H1G2_LACCS rbh
scrA1; PTS system sucrose-specific iiABC component
NECEvent2014_10_1_scaffold_55_41
Lactobacillus helveticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

41509..42966
DNA (1458bp) protein (486aa)
Beta-fructofuranosidase n=1 Tax=Lactobacillus helveticus R0052 RepID=J4BTG5_LACHE rbh
beta-fructofuranosidase rbh
Beta-fructofuranosidase {ECO:0000313|EMBL:AFR21433.1}; TaxID=880633 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helveticus R0052.;
NECEvent2014_10_1_scaffold_55_42
Lactobacillus helveticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

42979..43965
DNA (987bp) protein (329aa)
LacI family transcriptional regulator n=4 Tax=Lactobacillus helveticus RepID=F0NVI7_LACHH rbh
LacI family transcriptional regulator rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:AFR21432.1}; TaxID=880633 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helv
NECEvent2014_10_1_scaffold_55_43
Lactobacillus amylolyticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(44186..44533)
DNA (348bp) protein (116aa)
Transposase, IS4 family n=1 Tax=Lactobacillus amylolyticus DSM 11664 RepID=D4YUE2_9LACO
Transposase, IS4 family {ECO:0000313|EMBL:EFG55207.1}; TaxID=585524 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus amylolyticus DSM 1
IS4 family transposase
NECEvent2014_10_1_scaffold_55_44
Lactobacillus amylolyticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(44484..44780)
DNA (297bp) protein (99aa)
Transposase, IS4 family n=1 Tax=Lactobacillus amylolyticus DSM 11664 RepID=D4YUE2_9LACO
Transposase, IS4 family {ECO:0000313|EMBL:EFG55207.1}; TaxID=585524 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus amylolyticus DSM 1
IS4 family transposase
NECEvent2014_10_1_scaffold_55_45
Lactobacillus amylolyticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(44841..45101)
DNA (261bp) protein (87aa)
Transposase, IS4 family n=1 Tax=Lactobacillus amylolyticus DSM 11664 RepID=D4YUE2_9LACO
Transposase, IS4 family {ECO:0000313|EMBL:EFG55207.1}; TaxID=585524 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus amylolyticus DSM 1
transposase
NECEvent2014_10_1_scaffold_55_46
unknown

Not on your lists

comp(45094..45273)
DNA (180bp) protein (60aa)

This feature has no annotations

NECEvent2014_10_1_scaffold_55_47
Lactobacillus johnsonii, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

45289..45978
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Lactobacillus johnsonii N6.2 RepID=V5P573_LACJH rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHA97399.1}; TaxID=1408186 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus johnsonii N6.2.;"
NECEvent2014_10_1_scaffold_55_48
Lactobacillus helveticus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(46093..46851)
DNA (759bp) protein (253aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214,
3-dehydroquinate dehydratase n=7 Tax=Lactobacillus helveticus RepID=S5E0F1_LACHE rbh
3-dehydroquinate dehydratase rbh
NECEvent2014_10_1_scaffold_55_49
Lactobacillus kimbladii, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(46863..47777)
DNA (915bp) protein (305aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=
Shikimate dehydrogenase n=4 Tax=Lactobacillus jensenii RepID=C4VK90_9LACO rbh
Shikimate 5-dehydrogenase rbh
NECEvent2014_10_1_scaffold_55_50
Lactobacillus equicursoris, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

47930..48850
DNA (921bp) protein (307aa)
LysR substrate binding domain protein n=1 Tax=Lactobacillus sp. 66c RepID=K0NEN6_9LACO rbh
LysR substrate binding domain protein {ECO:0000313|EMBL:CCK83427.1}; TaxID=872326 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus equi
LysR family transcriptional regulator rbh
NECEvent2014_10_1_scaffold_55_51
Lactobacillus gastricus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(48919..50148)
DNA (1230bp) protein (410aa)
Transport protein n=1 Tax=Lactobacillus gastricus PS3 RepID=H4GJS3_9LACO rbh
Transport protein {ECO:0000313|EMBL:EHS86110.1}; TaxID=1144300 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gastricus PS3.;"
major facilitator transporter rbh
NECEvent2014_10_1_scaffold_55_52
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(50315..52027)
DNA (1713bp) protein (571aa)
Fumarate reductase flavoprotein subunit n=1 Tax=Lactobacillus crispatus EM-LC1 RepID=V5ELQ0_9LACO
Fumarate reductase flavoprotein subunit {ECO:0000313|EMBL:EST03848.1}; TaxID=1328863 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus c
frdA1; fumarate reductase flavoprotein subunit
NECEvent2014_10_1_scaffold_55_53
Lactobacillus helsingborgensis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(52170..53366)
DNA (1197bp) protein (399aa)
Transport protein n=5 Tax=Lactobacillus salivarius RepID=D8INI1_LACSC
Transport protein {ECO:0000313|EMBL:KJY66045.1}; TaxID=1218494 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus helsingborgensis.;"
transport protein rbh
Displaying items 31-53 of 53 in total

View Taxonomy