ggKbase home page

NECEvent2014_5_8_scaffold_28

Alias: 175_008_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_8_scaffold_28_1
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

209..1192
DNA (984bp) protein (328aa)
Oligopeptide ABC transporter, oligopeptide-binding protein n=1 Tax=Selenomonas sp. CM52 RepID=J5VBD0_9FIRM rbh
Oligopeptide ABC transporter, oligopeptide-binding protein {ECO:0000313|EMBL:EJU28669.1}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" so
periplasmic binding protein
NECEvent2014_5_8_scaffold_28_2
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1358..2107)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Selenomonas sp. F0473 RepID=K9CKR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU71401.1}; TaxID=999423 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
ABC transporter
NECEvent2014_5_8_scaffold_28_3
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2107..3117)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Selenomonas sp. F0473 RepID=K9CXD1_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU71402.1}; TaxID=999423 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
transporter permease
NECEvent2014_5_8_scaffold_28_4
Facklamia hominis, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3369..3854
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Facklamia hominis ACS-120-V-Sch10 RepID=S3YQV6_9LACT
Uncharacterized protein {ECO:0000313|EMBL:EKB53880.1}; TaxID=883111 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia hominis CCUG 36813.;"
hypothetical protein
NECEvent2014_5_8_scaffold_28_5
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3963..4787
DNA (825bp) protein (275aa)
Ribosomal protein L11 methyltransferase-like protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7US83_9FIRM rbh
Methyltransferase type 11 {ECO:0000313|EMBL:KGF07209.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacter
type 11 methyltransferase
NECEvent2014_5_8_scaffold_28_6
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4932..5870
DNA (939bp) protein (313aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UTN4_9FIRM rbh
Esterase {ECO:0000313|EMBL:KGF07210.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
putative esterase
NECEvent2014_5_8_scaffold_28_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6482..8560
DNA (2079bp) protein (693aa)
UPI0003D5955C related cluster n=1 Tax=unknown RepID=UPI0003D5955C rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
UvrABC system protein B
NECEvent2014_5_8_scaffold_28_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8574..11435
DNA (2862bp) protein (954aa)
UPI0003D658B0 related cluster n=1 Tax=unknown RepID=UPI0003D658B0 rbh
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit A
NECEvent2014_5_8_scaffold_28_9
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11419..13281
DNA (1863bp) protein (621aa)
UPI0003D65C65 related cluster n=1 Tax=unknown RepID=UPI0003D65C65 rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit C
NECEvent2014_5_8_scaffold_28_10
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13659..14561
DNA (903bp) protein (301aa)
UPI0003D659F2 related cluster n=1 Tax=unknown RepID=UPI0003D659F2 rbh
Phosphate ABC transporter substrate-binding protein, PhoT family {ECO:0000313|EMBL:ETI89430.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativico
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
NECEvent2014_5_8_scaffold_28_11
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14592..15455
DNA (864bp) protein (288aa)
UPI0003D62BF8 related cluster n=1 Tax=unknown RepID=UPI0003D62BF8 rbh
Phosphate ABC transporter permease {ECO:0000313|EMBL:KGF12334.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridial
pstC; phosphate ABC transporter permease PstC
NECEvent2014_5_8_scaffold_28_12
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15452..16288
DNA (837bp) protein (279aa)
UPI0003D6229D related cluster n=1 Tax=unknown RepID=UPI0003D6229D rbh
Phosphate ABC transporter membrane protein 2, PhoT family {ECO:0000313|EMBL:ETI89428.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
NECEvent2014_5_8_scaffold_28_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16290..17045
DNA (756bp) protein (252aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
pstB; ABC transporter ATPase (EC:3.6.3.27)
UPI0003D641C6 related cluster n=1 Tax=unknown RepID=UPI0003D641C6 rbh
NECEvent2014_5_8_scaffold_28_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17089..17730
DNA (642bp) protein (214aa)
UPI0003D5CBF3 related cluster n=1 Tax=unknown RepID=UPI0003D5CBF3 rbh
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Se
phosphate uptake regulator PhoU
NECEvent2014_5_8_scaffold_28_15
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17737..18420
DNA (684bp) protein (228aa)
UPI0003D5E5FD related cluster n=1 Tax=unknown RepID=UPI0003D5E5FD rbh
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGF12330.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostrid
two component transcriptional regulator, winged helix family
NECEvent2014_5_8_scaffold_28_16
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18417..20201
DNA (1785bp) protein (595aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incerta
UPI0003D5C562 related cluster n=1 Tax=unknown RepID=UPI0003D5C562 rbh
histidine kinase
NECEvent2014_5_8_scaffold_28_17
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20357..21607
DNA (1251bp) protein (417aa)
UPI0003D62FA7 related cluster n=1 Tax=unknown RepID=UPI0003D62FA7 rbh
Aminotransferase {ECO:0000313|EMBL:KGF12328.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A1
aminotransferase class I and II
NECEvent2014_5_8_scaffold_28_18
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21729..22577
DNA (849bp) protein (283aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS0004138
UPI0003D5C2F7 related cluster n=1 Tax=unknown RepID=UPI0003D5C2F7 rbh
UDP-3-0-acyl N-acetylglucosamine deacetylase
NECEvent2014_5_8_scaffold_28_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22574..23032
DNA (459bp) protein (153aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (
UPI0003D65817 related cluster n=1 Tax=unknown RepID=UPI0003D65817
3-hydroxyacyl-ACP dehydratase
NECEvent2014_5_8_scaffold_28_20
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23203..24015
DNA (813bp) protein (271aa)
UPI0003D689C6 related cluster n=1 Tax=unknown RepID=UPI0003D689C6 rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMA
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
NECEvent2014_5_8_scaffold_28_21
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24263..24451
DNA (189bp) protein (63aa)
UPI0003D6777D related cluster n=1 Tax=unknown RepID=UPI0003D6777D
Uncharacterized protein {ECO:0000313|EMBL:KGF12323.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacteriu
NECEvent2014_5_8_scaffold_28_22
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24486..24725
DNA (240bp) protein (80aa)
UPI0003D5FC1B related cluster n=1 Tax=unknown RepID=UPI0003D5FC1B
Uncharacterized protein {ECO:0000313|EMBL:KGF12322.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacteriu
NECEvent2014_5_8_scaffold_28_23
unknown

Not on your lists

24776..24940
DNA (165bp) protein (55aa)

This feature has no annotations

NECEvent2014_5_8_scaffold_28_24
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25456..25662
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF12324.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacteriu
NECEvent2014_5_8_scaffold_28_25
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25979..26803
DNA (825bp) protein (275aa)
UPI0003D5F513 related cluster n=1 Tax=unknown RepID=UPI0003D5F513 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGF12319.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacteriu
hypothetical protein
NECEvent2014_5_8_scaffold_28_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26800..27939
DNA (1140bp) protein (380aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=1403945 species="B
UPI0003D5AE0B related cluster n=1 Tax=unknown RepID=UPI0003D5AE0B rbh
lipid-A-disaccharide synthase
NECEvent2014_5_8_scaffold_28_27
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27932..29662
DNA (1731bp) protein (577aa)
UPI0003D62EED related cluster n=1 Tax=unknown RepID=UPI0003D62EED rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGF12317.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridia
lipid A export permease/ATP-binding protein MsbA
NECEvent2014_5_8_scaffold_28_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29664..30995
DNA (1332bp) protein (444aa)
UPI0003D61AC0 related cluster n=1 Tax=unknown RepID=UPI0003D61AC0 rbh
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:ETI85009.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Nega
3-deoxy-D-manno-octulosonic-acid transferase
NECEvent2014_5_8_scaffold_28_29
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

30979..32097
DNA (1119bp) protein (373aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO
UPI0003D66883 related cluster n=1 Tax=unknown RepID=UPI0003D66883 rbh
tetraacyldisaccharide 4'-kinase
NECEvent2014_5_8_scaffold_28_30
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

32079..32846
DNA (768bp) protein (256aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-k
UPI0003D6461E related cluster n=1 Tax=unknown RepID=UPI0003D6461E rbh
3-deoxy-manno-octulosonate cytidylyltransferase
Displaying items 1-30 of 87 in total

View Taxonomy