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NECEvent2014_5_8_scaffold_22_26

Organism: NECEvent2014_5_8_Negativicoccus_succinicivorans_52_30

near complete RP 51 / 55 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(25103..25729)

Top 3 Functional Annotations

Value Algorithm Source
sigH; RNA polymerase factor sigma-70 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 46.0
  • Coverage: 202.0
  • Bit_score: 195
  • Evalue 1.60e-47
UPI0003D5F292 related cluster n=1 Tax=unknown RepID=UPI0003D5F292 similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 208.0
  • Bit_score: 406
  • Evalue 1.20e-110
  • rbh
RNA polymerase sigma-H factor {ECO:0000313|EMBL:ETI86703.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succ similarity UNIPROT
DB: UniProtKB
  • Identity: 99.0
  • Coverage: 208.0
  • Bit_score: 406
  • Evalue 1.70e-110

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Taxonomy

Negativicoccus succinicivorans → Negativicoccus → Selenomonadales → Negativicutes → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 627
ATGGAGGCGACGGAGTATTCGTCGGAAATGCCGACGGATGAAGAGTTGGTACTCCGCAGCCAAGCAGGAGACACCGAGGCTCTGGAAGCGATTATTGAACGCTATCGAGGCTTAGCCAAATTGAGAACCCGCTCGTACTTTTTAGCCGGAGCGGAAAGCGACGATTTGGTGCAGGAAGCGATGATCGGTCTGTTTAAAGCGGCGCGCGATTACGACCCTAAATACGGTGCAAGCTTTAAAACGTTTGCCAATATCTGTATTACCCGGCAAATGCTGACGGCGATCAAAGGAGCTACTCGGTATAAACACCAGCCGCTCAATTCCTATATATCTCTCAATCGATCGGTATTTGAAGAGGATGACGGCGGTCGTCCGTTATTGGAAATACTGGCAACAGATAACGACAGCGATCCCGAGTCGATTTATTTACGTAACGAGTGGATGGTATCGCTTTCACAAGCGGTGCCGCGCGTTTTGAGCAAGCTGGAATTGCGGGTGCTGCTCTACTATTTACGAGGACTTCCTTATGAAACGATTGCGCAACGCATCGGTCGTCCGGTAAAAACAGTAGATAATGCGATTCAGCGCATGAAGCGTAAGATGGAATTATATTTTCGAAATCATTAA
PROTEIN sequence
Length: 209
MEATEYSSEMPTDEELVLRSQAGDTEALEAIIERYRGLAKLRTRSYFLAGAESDDLVQEAMIGLFKAARDYDPKYGASFKTFANICITRQMLTAIKGATRYKHQPLNSYISLNRSVFEEDDGGRPLLEILATDNDSDPESIYLRNEWMVSLSQAVPRVLSKLELRVLLYYLRGLPYETIAQRIGRPVKTVDNAIQRMKRKMELYFRNH*