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NECEvent2014_7_1_scaffold_558

Alias: 177_001_scaffold_558

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_7_1_scaffold_558_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..129
DNA (129bp) protein (43aa)
50S ribosomal protein L17 n=6 Tax=Salmonella enterica I RepID=G7SZU9_SALPS
rplQ; 50S ribosomal subunit protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
NECEvent2014_7_1_scaffold_558_2
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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236..604
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Citrobacter freundii RepID=UPI0002D821FB
Uncharacterized protein {ECO:0000313|EMBL:EOQ45565.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter s
hypothetical protein
NECEvent2014_7_1_scaffold_558_3
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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615..1040
DNA (426bp) protein (142aa)
HTH-type transcriptional regulator zntR n=2 Tax=Citrobacter RepID=R8V0Z8_9ENTR
HTH-type transcriptional regulator zntR {ECO:0000313|EMBL:EOQ45564.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" sourc
zntR; zinc-responsive transcriptional regulator
NECEvent2014_7_1_scaffold_558_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1097..1315
DNA (219bp) protein (73aa)
Alternative ribosome-rescue factor n=1 Tax=Citrobacter sp. KTE32 RepID=R8V5F8_9ENTR
Ribosome rescue factor A {ECO:0000313|EMBL:KKC65317.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter am
ribosome rescue factor A
NECEvent2014_7_1_scaffold_558_5
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1312..1725)
DNA (414bp) protein (138aa)
Large-conductance mechanosensitive channel n=2 Tax=Citrobacter RepID=R8V1T5_9ENTR
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; En
mscL; large-conductance mechanosensitive channel
NECEvent2014_7_1_scaffold_558_6
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1867..3243)
DNA (1377bp) protein (459aa)
Trk system potassium uptake protein trkA n=12 Tax=Enterobacteriaceae RepID=C1MCY0_9ENTR rbh
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:CEJ65332.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" sour
trkA; potassium transporter peripheral membrane component
NECEvent2014_7_1_scaffold_558_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3265..4554)
DNA (1290bp) protein (430aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|HAMAP-Rule:MF_01856, ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.176 {ECO:0000256|HAMAP-Rule:MF_01856};; 16S rRNA m5C967 methyltransferase {EC
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Citrobacter sp. KTE151 RepID=R8WKY6_9ENTR rbh
16S rRNA methyltransferase
NECEvent2014_7_1_scaffold_558_8
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4606..5553)
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=35703 species="Ba
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
methionyl-tRNA formyltransferase n=1 Tax=Citrobacter freundii RepID=UPI0002E762FC rbh
NECEvent2014_7_1_scaffold_558_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5568..6077)
DNA (510bp) protein (170aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=8 Tax=Citrobacter RepID=J1FUX6_9ENTR rbh
peptide deformylase
NECEvent2014_7_1_scaffold_558_10
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6207..7331
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Citrobacter freundii RepID=UPI000316A297 rbh
DNA processing protein DprA {ECO:0000313|EMBL:KKC65311.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter
DNA processing protein DprA
NECEvent2014_7_1_scaffold_558_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7303..7776
DNA (474bp) protein (158aa)
Protein Smg n=10 Tax=Citrobacter RepID=C1MCX5_9ENTR rbh
Protein Smg {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticu
hypothetical protein
NECEvent2014_7_1_scaffold_558_12
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7803..8345
DNA (543bp) protein (181aa)
DNA topoisomerase n=2 Tax=Citrobacter RepID=R8V0V1_9ENTR rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC65309.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter ama
hypothetical protein
NECEvent2014_7_1_scaffold_558_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8350..8922
DNA (573bp) protein (191aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
Threonylcarbamoyl-AMP synthase n=1 Tax=Citrobacter sp. KTE32 RepID=R8V0Y9_9ENTR rbh
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein rbh
NECEvent2014_7_1_scaffold_558_14
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8924..9745
DNA (822bp) protein (274aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=2 Tax=Citrobacter RepID=R8V5E9_9ENTR rbh
shikimate dehydrogenase
NECEvent2014_7_1_scaffold_558_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9742..9999
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Citrobacter freundii RepID=UPI00030F8A05
Uncharacterized protein {ECO:0000313|EMBL:KKC65306.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter ama
hypothetical protein
NECEvent2014_7_1_scaffold_558_16
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9975..10529)
DNA (555bp) protein (185aa)
Protein YrdA n=2 Tax=Citrobacter RepID=R8V060_9ENTR rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC65305.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter ama
hypothetical protein
NECEvent2014_7_1_scaffold_558_17
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10705..10848)
DNA (144bp) protein (48aa)
Uncharacterized protein n=19 Tax=Salmonella enterica I RepID=V2G6S3_SALET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM77229.1}; TaxID=1420013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pne
Displaying 17 items

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