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ACD9_25_6 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) similarity KEGG
DB: KEGG
40.7 312.0 224 4.70e-56 cth:Cthe_0908
PSI_RLU (db=PatternScan db_id=PS01129 from=140 to=154 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: PatternScan
null null null 0.0 cth:Cthe_0908
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=8 to=310 evalue=3.8e-77 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMTigr
null null null 3.80e-77 cth:Cthe_0908
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=1 to=306 evalue=1.3e-75) iprscan interpro
DB: HMMPanther
null null null 1.30e-75 cth:Cthe_0908
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=81 to=310 evalue=3.8e-61 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: superfamily
null null null 3.80e-61 cth:Cthe_0908
PseudoU_synth_2 (db=HMMPfam db_id=PF00849 from=89 to=251 evalue=1.2e-35 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMPfam
null null null 1.20e-35 cth:Cthe_0908
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=14 to=116 evalue=5.4e-12) iprscan interpro
DB: superfamily
null null null 5.40e-12 cth:Cthe_0908
no description (db=HMMSmart db_id=SM00363 from=13 to=70 evalue=8.4e-12 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
null null null 8.40e-12 cth:Cthe_0908
S4 (db=HMMPfam db_id=PF01479 from=14 to=58 evalue=6.8e-11 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 6.80e-11 cth:Cthe_0908
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=5 to=61 evalue=0.00039) iprscan interpro
DB: Gene3D
null null null 3.90e-04 cth:Cthe_0908
S4 (db=ProfileScan db_id=PS50889 from=13 to=76 evalue=14.428 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.44e+01 cth:Cthe_0908
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" UNIPROT
DB: UniProtKB
100.0 310.0 611 9.00e-172 K2G5Y6_9BACT
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 ribosomal large subunit pseudouridine synthase D [EC:5.4.99.12] alias=ACD9_72862.8122.12G0006,ACD9_72862.8122.12_6,ACD9_C00025G00006 id=137637 tax=ACD9 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i similarity UNIREF
DB: UNIREF90
100.0 null 610 2.60e-172 cth:Cthe_0908