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NECEvent2014_4_5_scaffold_558_11

Organism: NECEvent2014_4_5_Clostridium_perfringens_28_8

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(10152..10913)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=10 Tax=Clostridium perfringens RepID=H7CY74_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 5.10e-135
  • rbh
sigF; sporulation sigma factor SigF similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 1.40e-135
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE s similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 7.10e-135

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 762
ATGGATATAAGTAGTATTGAGAAAGATAATTTTAATTATGACAAAAATACAACTCTCATAGTCATGGCTAAAGAAGGAAATAAGGAAGCAATGAATAAGCTTATAGAAGTTAATACTCCTTTAGTCTCTTCAATATGCAAGAGATTTACAAATAGAGGGTATGACTATGAGGATATATTTCAGATTGGGTCAATGGGATTAGTTAAAGCTATAAACAACTTTAATGATAGTTTTAATGTTAAATTTTCAACTTATGCTGTGCCTATGATTATAGGTGAAATAAAGAGATTCTTAAGGGATGATGGAATAATAAAGGTAAGTAGAAGCACTAAGACTTTAGCTAAAAAGCTTCATTACAATAAGGAAGAACTAATAAAAAAATTAAATAGGGATCCTACTGTAGATGAATTAGCTGAATACTCTGGTGTTGATAAGGAAGAGGTAATAGTAGCCCTAGAATCAGCAAGTAGTATGCAATATCTATATGATACTATACACCATGATGAAGGAACGCCGGTTCTCTTAATAGATAAACTTAGTGAGAAGGGTGAAGATGATGACATGGTTAATAAAATAGCTTTAAGAGAGGCTATTAGTTCATTAGATTCAAAGGGTAAGCAAATCATAATGCTTAGGTATTTCAAGGATAAAACTCAAATTCAAGTTGCAAAAATGCTTGGTATAAGTCAAGTTCAAGTTTCTAGAATAGAGAAAAAGGTACTAAAAATTATGAAAGAAAAATTAGAAGAGGATTGATTATAA
PROTEIN sequence
Length: 254
MDISSIEKDNFNYDKNTTLIVMAKEGNKEAMNKLIEVNTPLVSSICKRFTNRGYDYEDIFQIGSMGLVKAINNFNDSFNVKFSTYAVPMIIGEIKRFLRDDGIIKVSRSTKTLAKKLHYNKEELIKKLNRDPTVDELAEYSGVDKEEVIVALESASSMQYLYDTIHHDEGTPVLLIDKLSEKGEDDDMVNKIALREAISSLDSKGKQIIMLRYFKDKTQIQVAKMLGISQVQVSRIEKKVLKIMKEKLEED*L*