Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.- 5.4.99.12) | similarity |
KEGG
DB: KEGG |
45.3 | 234.0 | 201 | 3.40e-49 | rch:RUM_13570 |
Pseudouridine synthase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCY4_RUMC1 | similarity |
UNIREF
DB: UNIREF90 |
45.0 | 0.0 | 200 | 4.00e+00 | rch:RUM_13570 |
pseudouridine synthase Tax=PER_GWF2_43_17 |
UNIPROT
DB: UniProtKB |
100.0 | 246.0 | 489 | 3.10e-135 | ggdbv1_5098087 | |
PSI_RSU (db=PatternScan db_id=PS01149 from=105 to=119 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | rch:RUM_13570 |
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=8 to=65 evalue=1.9e-09) | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 1.00e+00 | rch:RUM_13570 |
(db=HMMPfam db_id=PF01479 from=8 to=45 evalue=1.4e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | rch:RUM_13570 |
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=72 to=232 evalue=1.3e-50 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 1.00e+00 | rch:RUM_13570 |
no description (db=HMMSmart db_id=SM00363 from=8 to=66 evalue=3.0e-07 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMSmart |
0.0 | 0.0 | 0 | 3.00e+00 | rch:RUM_13570 |
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=12 to=245 evalue=4.8e-63) | iprscan |
interpro
DB: HMMPanther |
0.0 | 0.0 | 0 | 4.00e+00 | rch:RUM_13570 |
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=64 to=240 evalue=5.1e-38 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 5.00e+00 | rch:RUM_13570 |
(db=HMMPfam db_id=PF00849 from=68 to=199 evalue=8.5e-18 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 8.00e+00 | rch:RUM_13570 |
S4 (db=ProfileScan db_id=PS50889 from=8 to=72 evalue=12.836 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
0.0 | 0.0 | 0 | 1.20e+01 | rch:RUM_13570 |
similarity |
in-house
DB: RefSeq |
null | null | null | null | rch:RUM_13570 |