ggKbase home page

gwf2_scaffold_503_4 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.- 5.4.99.12) similarity KEGG
DB: KEGG
45.3 234.0 201 3.40e-49 rch:RUM_13570
Pseudouridine synthase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCY4_RUMC1 similarity UNIREF
DB: UNIREF90
45.0 0.0 200 4.00e+00 rch:RUM_13570
pseudouridine synthase Tax=PER_GWF2_43_17 UNIPROT
DB: UniProtKB
100.0 246.0 489 3.10e-135 ggdbv1_5098087
PSI_RSU (db=PatternScan db_id=PS01149 from=105 to=119 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: PatternScan
0.0 0.0 0 0.0 rch:RUM_13570
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=8 to=65 evalue=1.9e-09) iprscan interpro
DB: superfamily
0.0 0.0 0 1.00e+00 rch:RUM_13570
(db=HMMPfam db_id=PF01479 from=8 to=45 evalue=1.4e-09 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 rch:RUM_13570
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=72 to=232 evalue=1.3e-50 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866)) iprscan interpro
DB: HMMTigr
0.0 0.0 0 1.00e+00 rch:RUM_13570
no description (db=HMMSmart db_id=SM00363 from=8 to=66 evalue=3.0e-07 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
0.0 0.0 0 3.00e+00 rch:RUM_13570
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=12 to=245 evalue=4.8e-63) iprscan interpro
DB: HMMPanther
0.0 0.0 0 4.00e+00 rch:RUM_13570
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=64 to=240 evalue=5.1e-38 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: superfamily
0.0 0.0 0 5.00e+00 rch:RUM_13570
(db=HMMPfam db_id=PF00849 from=68 to=199 evalue=8.5e-18 interpro_id=IPR006145 interpro_description=Pseudouridine synthase, RsuA and RluB/C/D/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 8.00e+00 rch:RUM_13570
S4 (db=ProfileScan db_id=PS50889 from=8 to=72 evalue=12.836 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
0.0 0.0 0 1.20e+01 rch:RUM_13570
similarity in-house
DB: RefSeq
null null null null rch:RUM_13570