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gwf2_scaffold_503

Alias: PER_GWF2_43_18_3

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Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_503_1
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(174..3107)
DNA (2934bp) protein (978aa)
Uncharacterized protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BK91_SANKS
Uncharacterized protein {ECO:0000313|EMBL:KKT02415.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
hypothetical protein
seg (db=Seg db_id=seg from=646 to=667)
gwf2_scaffold_503_2
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(3112..3420)
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02416.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_503_3
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

3527..4999
DNA (1473bp) protein (491aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CC24_THET1
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:KKT02417.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=49)
gwf2_scaffold_503_4
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

4987..5727
DNA (741bp) protein (247aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCY4_RUMC1
pseudouridine synthase Tax=PER_GWF2_43_17
PSI_RSU (db=PatternScan db_id=PS01149 from=105 to=119 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
gwf2_scaffold_503_5
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

5821..6714
DNA (894bp) protein (298aa)
Serine-type D-Ala-D-Ala carboxypeptidase, D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 5/6) {ECO:0000313|EMBL:KKT02419.1}; EC=3.4.16.4 {ECO:0000313|EMBL:KKT02419.1};; TaxID=1619068
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Protein containing Peptidase S11, D-alanyl-D-alanine carboxypeptidase A domain n=1 Tax=sediment metagenome RepID=D9PKA1_9ZZZZ
seg (db=Seg db_id=seg from=2 to=17)
gwf2_scaffold_503_6
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

6759..7820
DNA (1062bp) protein (354aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=PER_GWF2_43_17
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EHW8_9CHLR
hypothetical protein
MRAY_2 (db=PatternScan db_id=PS01348 from=193 to=204 evalue=0.0 interpro_id=IPR018480 interpro_description=Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site)
gwf2_scaffold_503_7
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(8108..10000)
DNA (1893bp) protein (631aa)
transmembrane_regions Tax=PER_GWF2_43_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=115)
coiled-coil (db=Coil db_id=coil from=435 to=456 evalue=NA)
gwf2_scaffold_503_8
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(10033..10584)
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PXZ3_STANL
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=PER_GWF2_43_17
ECF subfamily RNA polymerase sigma-24 subunit
(db=HMMPfam db_id=PF08281 from=122 to=172 evalue=1.2e-12 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
gwf2_scaffold_503_9
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(10623..10907)
DNA (285bp) protein (95aa)
transmembrane_regions Tax=PER_GWF2_43_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=13 to=30)
gwf2_scaffold_503_10
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(10967..12124)
DNA (1158bp) protein (386aa)
Phosphofructokinase, 6-phosphofructokinase {ECO:0000313|EMBL:KKT02424.1}; EC=2.7.1.11 {ECO:0000313|EMBL:KKT02424.1};; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria ba
6-phosphofructokinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2L8_9PROT rbh
phosphofructokinase
seg (db=Seg db_id=seg from=21 to=38)
gwf2_scaffold_503_11
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(12245..13279)
DNA (1035bp) protein (345aa)
hypothetical protein; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] Tax=PER_GWF2_43_17
Fructose-1,6-bisphosphate aldolase n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PSI4_9PAST
hypothetical protein
seg (db=Seg db_id=seg from=160 to=171)
gwf2_scaffold_503_12
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(13347..14063)
DNA (717bp) protein (239aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_503_13
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(14369..14713)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02427.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwf2_scaffold_503_14
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(14715..14816)
DNA (102bp) protein (34aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02428.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_503_15
Peregrinibacteria bacterium GW2011_GWA2_43_8, Peregrinibacteria, Bacteria

Not on your lists

comp(14821..15741)
DNA (921bp) protein (307aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=3 Tax=Bacillus megaterium RepID=D5DQX8_BACMQ
Ribosomal RNA small subunit methyltransferase H {ECO:0000313|EMBL:KKT19342.1}; TaxID=1619056 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_43_8.;"
seg (db=Seg db_id=seg from=5 to=19)
gwf2_scaffold_503_16
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(15906..16562)
DNA (657bp) protein (219aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RJ56_METP4
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=PER_GWF2_43_17
Sua5/YciO/YrdC/YwlC family protein
SUA5 (db=HMMPanther db_id=PTHR17490 from=58 to=217 evalue=1.5e-37)
gwf2_scaffold_503_17
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

16568..17566
DNA (999bp) protein (333aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=PER_GWF2_43_17
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0J3_9CLOT rbh
glyceraldehyde-3-phosphate dehydrogenase, type I
GAPDH (db=PatternScan db_id=PS00071 from=151 to=158 evalue=0.0 interpro_id=IPR020830 interpro_description=Glyceraldehyde 3-phosphate dehydrogenase, active site GO=Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_503_18
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(17614..18231)
DNA (618bp) protein (206aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_503_19
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(18250..18828)
DNA (579bp) protein (193aa)
Tax=PER_GWF2_43_17
gwf2_scaffold_503_20
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

18924..19649
DNA (726bp) protein (242aa)
Transcriptional regulator of heat shock gene n=2 Tax=Saccharobacteria RepID=UPI00016B2634
Uncharacterized protein {ECO:0000313|EMBL:KKT02434.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
Heat-inducible transcription repressor hrcA
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
gwf2_scaffold_503_21
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

19646..20113
DNA (468bp) protein (156aa)
Protein GrpE n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EIL5_9CHLR
grpE; co-chaperone GrpE; K03687 molecular chaperone GrpE Tax=PER_GWF2_43_17
grpE; co-chaperone GrpE
GRPE (db=PatternScan db_id=PS01071 from=110 to=150 evalue=0.0 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Biological Process: protein folding (GO:0006457), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:0051087))
gwf2_scaffold_503_22
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

comp(20119..20637)
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02436.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_503_23
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

20737..21375
DNA (639bp) protein (213aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02437.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_503_24
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

21460..23397
DNA (1938bp) protein (646aa)
Chaperone protein DnaK n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PA29_DESSD rbh
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK Tax=PER_GWF2_43_17
chaperone protein DnaK
HSP70_1 (db=PatternScan db_id=PS00297 from=7 to=14 evalue=0.0 interpro_id=IPR018181 interpro_description=Heat shock protein 70, conserved site)
gwf2_scaffold_503_25
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

23468..24373
DNA (906bp) protein (302aa)
Bile acid:sodium symporter family protein n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GI56_CALEA
Bile acid:sodium symporter family protein, bile acid:Na+ symporter, BASS family {ECO:0000313|EMBL:KKT02439.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium
bile acid:sodium symporter family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwf2_scaffold_503_26
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

24450..25304
DNA (855bp) protein (285aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02440.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
gwf2_scaffold_503_27
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

25301..25921
DNA (621bp) protein (207aa)
Phosphatidylserine decarboxylase, phosphatidylserine decarboxylase {ECO:0000313|EMBL:KKT02441.1}; EC=4.1.1.65 {ECO:0000313|EMBL:KKT02441.1};; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" sour
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJS9_THEYD
phosphatidylserine decarboxylase
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
gwf2_scaffold_503_28
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

25933..26433
DNA (501bp) protein (167aa)
CDP-diacylglycerol/serine O-phosphatidyltransferase, phosphatidylserine synthase {ECO:0000313|EMBL:KKT02442.1}; EC=2.7.8.8 {ECO:0000313|EMBL:KKT02442.1};; TaxID=1619068 species="Bacteria; Peregrinibac
CDP-diacylglycerol/serine O-phosphatidyltransferase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J1B9_9GAMM
CDP-diacylglycerol/serine O-phosphatidyltransferase
CDP_ALCOHOL_P_TRANSF (db=PatternScan db_id=PS00379 from=51 to=73 evalue=0.0 interpro_id=IPR000462 interpro_description=CDP-alcohol phosphatidyltransferase GO=Biological Process: phospholipid biosynthetic process (GO:0008654), Cellular Component: membrane (GO:0016020), Molecular Function: phosphotransferase activity, for other substituted phosphate groups (GO:0016780))
gwf2_scaffold_503_29
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

26430..27731
DNA (1302bp) protein (434aa)
Seryl-tRNA synthetase, seryl-tRNA synthetase {ECO:0000313|EMBL:KKT02443.1}; EC=6.1.1.11 {ECO:0000313|EMBL:KKT02443.1};; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEW0_DESTA rbh
seg (db=Seg db_id=seg from=87 to=100)
gwf2_scaffold_503_30
PER_GWF2_43_17, Peregrinibacteria, Bacteria

Not on your lists

27786..28532
DNA (747bp) protein (249aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02444.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
coiled-coil (db=Coil db_id=coil from=228 to=249 evalue=NA)
(db=HMMPfam db_id=PF01261 from=19 to=184 evalue=1.6e-12 interpro_id=IPR012307 interpro_description=Xylose isomerase, TIM barrel domain)
no description (db=Gene3D db_id=G3DSA:3.20.20.150 from=12 to=218 evalue=1.8e-09 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
Displaying items 1-30 of 98 in total

View Taxonomy