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NECEvent2014_5_8_scaffold_423

Alias: 175_008_scaffold_423

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_8_scaffold_423_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..566
DNA (564bp) protein (188aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=Q8XJT7_CLOPE rbh
DNA polymerase III subunit epsilon
Uncharacterized protein {ECO:0000313|EMBL:BAB81372.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_5_8_scaffold_423_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(603..932)
DNA (330bp) protein (110aa)
Single-stranded DNA-binding protein n=9 Tax=Clostridium perfringens RepID=H7CX63_CLOPF
single-strand DNA binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
NECEvent2014_5_8_scaffold_423_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1213..2643)
DNA (1431bp) protein (477aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=8 Tax=Clostridium perfringens RepID=H7CX64_CLOPF rbh
NECEvent2014_5_8_scaffold_423_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2886..3146)
DNA (261bp) protein (87aa)
Phosphocarrier protein (Hpr) n=11 Tax=Clostridium perfringens RepID=H7CX65_CLOPF
hpr; phosphocarrier protein
Phosphocarrier protein {ECO:0000313|EMBL:BAB81375.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 /
NECEvent2014_5_8_scaffold_423_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3241..4434)
DNA (1194bp) protein (398aa)
aspB; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase {ECO:0000313|EMBL:EDT22777.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EDT22777.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Aspartate aminotransferase n=2 Tax=Clostridium perfringens RepID=Q0TPT3_CLOP1 rbh
NECEvent2014_5_8_scaffold_423_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4587..4847)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=11 Tax=Clostridium perfringens RepID=H7CX67_CLOPF
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:EDT13823.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str
NECEvent2014_5_8_scaffold_423_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5065..6600)
DNA (1536bp) protein (512aa)
Ribonuclease Y {ECO:0000255|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000255|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00335};; TaxID=195102 species="Bacteria; Firmicutes; Clostridi
Ribonuclease Y n=7 Tax=Clostridium perfringens RepID=RNY_CLOP1 rbh
phosphodiesterase
NECEvent2014_5_8_scaffold_423_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6948..8006)
DNA (1059bp) protein (353aa)
Protein RecA n=9 Tax=Clostridium perfringens RepID=RECA_CLOP1 rbh
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=451756 species="Bacteria; Firmicute
NECEvent2014_5_8_scaffold_423_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8142..8732)
DNA (591bp) protein (197aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=7 Tax=Clostridium perfringens RepID=H7CX70_CLOPF rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EIA16525.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_5_8_scaffold_423_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8716..10053)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO n=9 Tax=Clostridium perfringens RepID=RIMO_CLOP1 rbh
tRNA modifying protein
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
NECEvent2014_5_8_scaffold_423_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10122..12512)
DNA (2391bp) protein (797aa)
DNA translocase FtsK n=2 Tax=Clostridium perfringens RepID=Q0TPS7_CLOP1 rbh
DNA translocase FtsK {ECO:0000313|EMBL:EDT22751.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 36
ftsK; DNA translocase FtsK
NECEvent2014_5_8_scaffold_423_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12644..13333)
DNA (690bp) protein (230aa)
clpP; Clp protease (EC:3.4.21.92)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=Q8XJS7_CLOPE rbh
Uncharacterized protein {ECO:0000313|EMBL:BAB81383.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_5_8_scaffold_423_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13387..14583)
DNA (1197bp) protein (399aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Aspartokinase n=2 Tax=Clostridium perfringens RepID=Q0TPS5_CLOP1 rbh
NECEvent2014_5_8_scaffold_423_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14597..14872)
DNA (276bp) protein (92aa)
PRC-barrel domain-containing protein n=11 Tax=Clostridium perfringens RepID=H7CX75_CLOPF
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:EDT26228.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str.
NECEvent2014_5_8_scaffold_423_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15007..17115)
DNA (2109bp) protein (703aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=451754
pnpA; polynucleotide phosphorylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=2 Tax=Clostridium perfringens RepID=PNP_CLOP1 rbh
NECEvent2014_5_8_scaffold_423_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17207..17470)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=11 Tax=Clostridium perfringens RepID=RS15_CLOP1
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_5_8_scaffold_423_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17586..18515)
DNA (930bp) protein (310aa)
ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=451754 species="Bacteria; Firmicutes;
Riboflavin biosynthesis protein RibF n=3 Tax=Clostridium perfringens RepID=Q0TPS1_CLOP1 rbh
NECEvent2014_5_8_scaffold_423_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18519..18617)
DNA (99bp) protein (33aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V5N2_CLOPF
truB; tRNA pseudouridine synthase B
Displaying 18 items

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