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NECEvent2014_2_8_scaffold_124

Alias: 172_008_scaffold_124

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_8_scaffold_124_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(334..1314)
DNA (981bp) protein (327aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=T3HW24_CLODC rbh
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21224.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_8_scaffold_124_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1478..2350)
DNA (873bp) protein (291aa)
Calcineurin-like phosphoesterase family protein n=111 Tax=Clostridium difficile RepID=C9XNJ3_CLODC rbh
phosphoesterase
Calcineurin-like phosphoesterase family protein {ECO:0000313|EMBL:EQE67646.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_8_scaffold_124_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2514..3065)
DNA (552bp) protein (184aa)
Transcriptional regulator, RmlC-type n=192 Tax=Clostridium difficile RepID=Q18AY1_CLOD6 rbh
Transcriptional regulator, RmlC-type
Transcriptional regulator, RmlC-type {ECO:0000313|EMBL:CCL21222.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
NECEvent2014_2_8_scaffold_124_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3085..3987)
DNA (903bp) protein (301aa)
pflC; Pyruvate formate-lyase 2-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 2-activating enzyme {ECO:0000313|EMBL:CCL21221.1}; EC=1.97.1.4 {ECO:0000313|EMBL:CCL21221.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrep
Glycyl-radical enzyme activating family protein n=94 Tax=Clostridium difficile RepID=T3HV26_CLODC rbh
NECEvent2014_2_8_scaffold_124_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4002..6374)
DNA (2373bp) protein (791aa)
pflD; Formate acetyltransferase (Pyruvateformate-lyase) (EC:2.3.1.54)
Formate acetyltransferase (Pyruvate formate-lyase) {ECO:0000313|EMBL:CCL21220.1}; EC=2.3.1.54 {ECO:0000313|EMBL:CCL21220.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
Glycerol dehydratase n=168 Tax=Clostridium difficile RepID=T3HW82_CLODC rbh
NECEvent2014_2_8_scaffold_124_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6595..7284)
DNA (690bp) protein (230aa)
Uncharacterized protein n=58 Tax=Clostridium difficile RepID=G6BVU0_CLODI rbh
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CAJ67969.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_8_scaffold_124_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7890..8948
DNA (1059bp) protein (353aa)
Helix-turn-helix domain protein n=7 Tax=Clostridium difficile RepID=T2U2E2_CLODI rbh
Conjugative transposon protein {ECO:0000313|EMBL:CKG94121.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
putative conjugative transposon proteinTn1549-like, CTn4-Orf1
NECEvent2014_2_8_scaffold_124_8
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8969..9187
DNA (219bp) protein (73aa)
Uncharacterized protein n=10 Tax=root RepID=A7VRN3_9CLOT
conjugative transposon protein
Uncharacterized protein {ECO:0000313|EMBL:EGX68191.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_
NECEvent2014_2_8_scaffold_124_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9270..9746
DNA (477bp) protein (159aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2U1L6_CLODI rbh
putative conjugative transposon proteinTn1549-like, CTn4-Orf3
Putative ATPase of the AAA superfamily {ECO:0000313|EMBL:CKG94077.1}; Putative conjugative transposon proteinTn1549-like, CTn4-Orf3 {ECO:0000313|EMBL:CEJ97684.1}; TaxID=1496 species="Bacteria; Firmicu
NECEvent2014_2_8_scaffold_124_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9743..11530
DNA (1788bp) protein (596aa)
Type IV secretory system Conjugative DNA transfer family protein n=4 Tax=Clostridium difficile RepID=T2U2C6_CLODI rbh
conjugative transfer protein
Putative conjugative transfer proteinTn1549-like, CTn4-Orf4 {ECO:0000313|EMBL:CEJ97683.1}; TRAG family protein {ECO:0000313|EMBL:CKG94051.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clos
NECEvent2014_2_8_scaffold_124_11
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11523..11690
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=U3W6F9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EGX68188.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_
hypothetical protein
NECEvent2014_2_8_scaffold_124_12
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11890..12105
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=root RepID=A7VRM9_9CLOT
conjugative transposon protein
Uncharacterized protein {ECO:0000313|EMBL:EDO61709.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753
NECEvent2014_2_8_scaffold_124_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12122..12991
DNA (870bp) protein (290aa)
Uncharacterized protein n=9 Tax=Firmicutes RepID=N9WL36_CLOIN rbh
membrane protein
Putative membrane protein Tn1549-like,CTn4-Orf7 {ECO:0000313|EMBL:CEJ97680.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_8_scaffold_124_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13013..13417
DNA (405bp) protein (135aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf8 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AX0_CLOD6
conjugative transposon protein
Putative conjugative transposon protein Tn1549-like, CTn4-Orf8 {ECO:0000313|EMBL:CAJ67961.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostri
NECEvent2014_2_8_scaffold_124_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13365..15794
DNA (2430bp) protein (810aa)
conjugal transfer protein TraE n=1 Tax=Clostridium difficile RepID=UPI00017F5FAE rbh
putative hydrolase Tn1549-like, CTn4-Orf9
Putative hydrolase Tn1549-like, CTn4-Orf9 {ECO:0000313|EMBL:CEJ97678.1}; TraE protein {ECO:0000313|EMBL:CKG93966.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
NECEvent2014_2_8_scaffold_124_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15791..16750
DNA (960bp) protein (320aa)
DNA-methyltransferase (EC:2.1.1.113)
DNA-methyltransferase, cytosine-N4-specific Tn1549-like, CTn4-Orf10 {ECO:0000313|EMBL:CAJ67959.1}; EC=2.1.1.113 {ECO:0000313|EMBL:CAJ67959.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia;
DNA-methyltransferase, cytosine-N4-specific Tn1549-like, CTn4-Orf10 n=3 Tax=Clostridium difficile RepID=Q18AW5_CLOD6 rbh
NECEvent2014_2_8_scaffold_124_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16777..18717
DNA (1941bp) protein (647aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf11 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW6_CLOD6 rbh
putative conjugative transposon proteinTn1549-like, CTn4-Orf11
Putative conjugative transposon protein Tn1549-like, CTn4-Orf11 {ECO:0000313|EMBL:CAJ67958.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_8_scaffold_124_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18749..19006
DNA (258bp) protein (86aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf12 n=2 Tax=Clostridium difficile RepID=Q18AW7_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn1549-like, CTn4-Orf12 {ECO:0000313|EMBL:CEJ97675.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG93890.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridi
NECEvent2014_2_8_scaffold_124_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18996..19724
DNA (729bp) protein (243aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2U1J7_CLODI rbh
cell surface protein
Putative cell surface protein Tn1549-like,CTn4-Orf13 {ECO:0000313|EMBL:CAJ67956.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_8_scaffold_124_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19721..19909
DNA (189bp) protein (63aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf14 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW0_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf14
Putative conjugative transposon proteinTn1549-like, CTn4-Orf14 {ECO:0000313|EMBL:CEJ97673.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
NECEvent2014_2_8_scaffold_124_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19926..22016
DNA (2091bp) protein (697aa)
topB; DNA topoisomerase III; Tn1549-like, CTn4-Orf15 (EC:5.99.1.2)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1496 species="Bacteria; Firmicutes;
DNA topoisomerase n=3 Tax=Clostridium difficile RepID=T2U2A8_CLODI rbh
NECEvent2014_2_8_scaffold_124_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22149..25733
DNA (3585bp) protein (1195aa)
YodL-like family protein n=4 Tax=Clostridium difficile RepID=T2U2Y5_CLODI rbh
putative antirestriction proteinTn1549-like,CTn4-Orf16
Domain of uncharacterised function (DUF955)./Antirestriction protein (ArdA) {ECO:0000313|EMBL:CKG93809.1}; Putative antirestriction proteinTn1549-like,CTn4-Orf16 {ECO:0000313|EMBL:CEJ97671.1}; TaxID=1
Displaying 22 items

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