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RifSed_csp1_19ft_2_scaffold_1919

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_1919_1
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(665..2329)
-----------------
DNA (1665bp)
protein (555aa)
Mobile element protein
Transposase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH40_METAC
A0A0E3LH99_9EURY Mobile element protein {ECO:0000313|EMBL:AKB43901.1}; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina vacuolata Z-761.;"
RifSed_csp1_19ft_2_scaffold_1919_2

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comp(2652..3002)
-----------------
DNA (351bp)
protein (117aa)
F420H2 dehydrogenase, subunit FpoO
F420H2 dehydrogenase, subunit FpoO n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7E7_METMS
1682552859 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_1919_3

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comp(3007..4467)
-----------------
DNA (1461bp)
protein (487aa)
F420H2 dehydrogenase subunit N rbh
F420H2 dehydrogenase subunit N n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7E8_METMS rbh
1682552858 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_1919_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4464..5957)
-----------------
DNA (1494bp)
protein (498aa)
proton-translocating NADH-quinone oxidoreductase subunit M rbh
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6I7_METEZ rbh
A0A062VB46_9EURY Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:KCZ72535.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72535.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5979..7976)
-----------------
DNA (1998bp)
protein (666aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5) rbh
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPK4_METZD rbh
A0A062V069_9EURY F420H2 dehydrogenase subunit L {ECO:0000313|EMBL:KCZ72536.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72536.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7978..8280)
-----------------
DNA (303bp)
protein (101aa)
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)
UPI0003D1C60C related cluster n=1 Tax=unknown RepID=UPI0003D1C60C
A0A062V5E4_9EURY NADH:ubiquinone oxidoreductase subunit 11 or 4L (Chain K) {ECO:0000313|EMBL:KCZ72537.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72537.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8280..8528)
-----------------
DNA (249bp)
protein (83aa)
A0A062V7L1_9EURY Uncharacterized protein {ECO:0000313|EMBL:KCZ72538.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8518..8769)
-----------------
DNA (252bp)
protein (84aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Putative NADH-quinone oxidoreductase chain J id=1722526 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
A0A062V9Z5_9EURY NADH:ubiquinone oxidoreductase subunit 6 (Chain J) {ECO:0000313|EMBL:KCZ72539.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_9

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comp(8769..9185)
-----------------
DNA (417bp)
protein (139aa)
NADH-quinone oxidoreductase subunit I
NADH-quinone oxidoreductase subunit I id=3601172 bin=GWF2_Geobacter_54_21 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
1511038308 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_1919_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9186..10277)
-----------------
DNA (1092bp)
protein (364aa)
NADH:ubiquinone oxidoreductase subunit H (EC:1.6.99.5)
nuoH; NADH-quinone oxidoreductase subunit H (NADH dehydrogenase I, chain H) (NDH-1, chain H) (EC:1.6.5.3 1.6.99.5) id=14429490 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
A0A062V074_9EURY F(420)H(2) oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; F(420)H(2) dehydrogenase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; FPO subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_11
unknown

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comp(10282..11430)
-----------------
DNA (1149bp)
protein (383aa)
nuoD; NADH:quinone oxidoreductase 49 kD subunit 7
NADH-quinone oxidoreductase subunit D n=1 Tax=Dehalococcoides sp. (strain VS) RepID=D2BHX7_DEHSV
86923180 Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_1919_12
unknown

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comp(11432..11935)
-----------------
DNA (504bp)
protein (168aa)
NADH dehydrogenase subunit C (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LN11_9EURY
86923179 Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_1919_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11932..12546)
-----------------
DNA (615bp)
protein (205aa)
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPT2_9FIRM
107176748 Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_1919_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12513..12887)
-----------------
DNA (375bp)
protein (125aa)
NADH dehydrogenase (ubiquinone), subunit A
NADH dehydrogenase I subunit A n=1 Tax=uncultured prokaryote RepID=H5SPA0_9ZZZZ
A0A062VB54_9EURY NADH:ubiquinone oxidoreductase subunit 3 (Chain A) {ECO:0000313|EMBL:KCZ72545.1}; EC=1.6.5.3 {ECO:0000313|EMBL:KCZ72545.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_15

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12978..14099
-----------------
DNA (1122bp)
protein (374aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSV2_METAC
1511038302 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_1919_16
unknown

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comp(14096..14497)
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein
Sjogrens syndrome scleroderma autoantigen 1 n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B953_METTP
86922548 Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_1919_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14578..14847
-----------------
DNA (270bp)
protein (90aa)
hypothetical protein
UPF0147 protein UNCMA_18170 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W5G2_UNCMA
A0A062VA03_9EURY UPF0147 protein ANME2D_00978 {ECO:0000256|HAMAP-Rule:MF_00342}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15288..16550
-----------------
DNA (1263bp)
protein (421aa)
cdc6; cell division control protein 6 rbh
ORC1-type DNA replication protein 1 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=CDC61_METMA rbh
A0A062VB59_9EURY ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(16539..17114)
-----------------
DNA (576bp)
protein (192aa)
peptidase S26B, signal peptidase
Peptidase S26B, signal peptidase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E5R4_METEZ
A0A062V082_9EURY Signal peptidase I {ECO:0000313|EMBL:KCZ72551.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_1919_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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17179..18288
-----------------
DNA (1110bp)
protein (370aa)
DNA-directed DNA polymerase
DNA-directed DNA polymerase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MCR0_9EURY
A0A062V5F7_9EURY DNA polymerase II small subunit {ECO:0000256|HAMAP-Rule:MF_00325}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00325};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00325};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Displaying 20 items

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