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RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_1
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

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1..396
-----------------
DNA (396bp)
protein (132aa)
Bacteriophage-associated integrase XerDC family protein n=1 Tax=Brachyspira pilosicoli B2904 RepID=J9UIU5_BRAPL
bacteriophage-associated integrase XerDC family protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
bacteriophage-associated integrase XerDC family protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_2
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(609..2393)
-----------------
DNA (1785bp)
protein (595aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_3
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

2515..6252
-----------------
DNA (3738bp)
protein (1246aa)
Uncharacterized protein n=1 Tax=Sulfurimonas sp. AST-10 RepID=T0J1D9_9HELI
hypothetical protein
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_4
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(6468..6833)
-----------------
DNA (366bp)
protein (122aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_5
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(6844..7377)
-----------------
DNA (534bp)
protein (178aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E041_DICTD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
ECF subfamily RNA polymerase sigma-24 subunit
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_6
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(7380..8153)
-----------------
DNA (774bp)
protein (258aa)
DNA replication protein n=1 Tax=Clostridium sp. CAG:356 RepID=R6YR70_9CLOT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_7
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(8158..8508)
-----------------
DNA (351bp)
protein (117aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_8
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

8649..9629
-----------------
DNA (981bp)
protein (327aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E197_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_trna_1
unknown

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comp(9635..9708)
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_9
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(9786..11498)
-----------------
DNA (1713bp)
protein (571aa)
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Dihydroxy-acid dehydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=ILVD_PARL1
dihydroxy-acid dehydratase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_10
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

11677..12336
-----------------
DNA (660bp)
protein (220aa)
Methyltransferase domain protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 RepID=U5DRZ8_9CHRO
methyltransferase type 11 Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
methyltransferase type 11
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_11
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

12351..13985
-----------------
DNA (1635bp)
protein (545aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_12
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(13995..14972)
-----------------
DNA (978bp)
protein (326aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DZ33_9BACT
branched-chain amino acid aminotransferase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_13
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(14987..16072)
-----------------
DNA (1086bp)
protein (362aa)
transmembrane_regions 7..29 Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
transmembrane_regions 7..29 id=19355 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_14
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

16262..16732
-----------------
DNA (471bp)
protein (157aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_15
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

16928..19198
-----------------
DNA (2271bp)
protein (757aa)
1A family penicillin-binding protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
UPI00020A9D29 related cluster id=3932956 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
1A family penicillin-binding protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_16
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

19205..19963
-----------------
DNA (759bp)
protein (253aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
yacO; putative TrmH family tRNA/rRNA methyltransferase YacO (EC:2.1.1.-)
UPI0003D6A8DD related cluster n=1 Tax=unknown RepID=UPI0003D6A8DD
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_17
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(19943..20887)
-----------------
DNA (945bp)
protein (315aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00035DE797
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_18
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

20985..21323
-----------------
DNA (339bp)
protein (113aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_19
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

21333..22787
-----------------
DNA (1455bp)
protein (485aa)
Polysaccharide biosynthesis protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TC71_METSL
polysaccharide biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
polysaccharide biosynthesis protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_20
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

22806..23684
-----------------
DNA (879bp)
protein (293aa)
lipoic acid synthetase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Lipoyl synthase n=1 Tax=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) RepID=D7APT8_THEM3
lipoic acid synthetase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_21
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

23681..24826
-----------------
DNA (1146bp)
protein (382aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
YibE/F family protein id=19096 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_22
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

24827..25450
-----------------
DNA (624bp)
protein (208aa)
alpha-ribazole phosphatase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Alpha-ribazole phosphatase n=1 Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DP32_HALPG
alpha-ribazole phosphatase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_23
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

25595..26620
-----------------
DNA (1026bp)
protein (342aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. P2S70 RepID=U7G3J9_9GAMM
GM13946 gene product from transcript GM13946-RA; K04659 thrombospondin Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
cartilage oligomeric matrix protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_24
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

26644..27087
-----------------
DNA (444bp)
protein (148aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_25
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(27103..27798)
-----------------
DNA (696bp)
protein (232aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HIT4_9SPIR
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_26
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

27886..29277
-----------------
DNA (1392bp)
protein (464aa)
tyrosine phenol-lyase (EC:4.1.99.2); K01668 tyrosine phenol-lyase [EC:4.1.99.2] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
tyrosine phenol-lyase (EC:4.1.99.2)
Tyrosine phenol-lyase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=TPL_NOSP7
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_27
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

29372..29872
-----------------
DNA (501bp)
protein (167aa)
CBS domain containing protein n=3 Tax=Geobacillus RepID=D7D348_GEOSC
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
yhcV; forespore-specific sporulation protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_28
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(29885..31237)
-----------------
DNA (1353bp)
protein (451aa)
peptidase T-like protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
peptidase T-like protein id=4179256 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
peptidase M20/M25/M40 family protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_2013_29
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

31396..33036
-----------------
DNA (1641bp)
protein (547aa)
carboxypeptidase Taq (EC:3.4.17.19); K01299 carboxypeptidase Taq [EC:3.4.17.19] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
carboxypeptidase Taq (EC:3.4.17.19)
Thermostable carboxypeptidase 1 n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9G8X4_9BACL
Displaying items 1-30 of 33 in total

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