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RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(442..3033)
DNA (2592bp) protein (864aa)
1A family penicillin-binding protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hau:Haur_3225 1A family penicillin-binding protein id=86421 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

3053..3898
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037B45D7
putative membrane-associated protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
putative membrane-associated protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3895..4920)
DNA (1026bp) protein (342aa)
permease Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Putative uncharacterized protein id=1916078 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
permease
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_4
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

5071..5307
DNA (237bp) protein (79aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
Putative glutaredoxin id=3423427 bin=GWA1_ZB2_49_26 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
glutaredoxin
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

5312..5917
DNA (606bp) protein (202aa)
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Haloacid dehalogenase id=4694127 bin=GWC2_TM7_48_9 species=Rhodanobacter fulvus genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
hydrolase, putative, cyclic phosphodiesterase-like domain-containing
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

5904..6863
DNA (960bp) protein (320aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Thioredoxin reductase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBG9_THET1
thioredoxin reductase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(6860..7426)
DNA (567bp) protein (189aa)
efp; translation elongation factor P; K02356 elongation factor P Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801315 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
efp; translation elongation factor P
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7460..7642
DNA (183bp) protein (61aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(7683..8150)
DNA (468bp) protein (156aa)
Single-stranded DNA-binding protein n=1 Tax=uncultured bacterium RepID=K1Z192_9BACT
ssb; ssDNA-binding protein controls activity of RecBCD nuclease; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ssb; ssDNA-binding protein controls activity of RecBCD nuclease
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(8170..8610)
DNA (441bp) protein (147aa)
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S6 id=1816778 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S6
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(8863..9873)
DNA (1011bp) protein (337aa)
Ribosome-binding ATPase YchF n=7 Tax=Clostridium thermocellum RepID=A3DDT2_CLOTH
GTP-binding protein YchF; K06942 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ychF; GTP-dependent nucleic acid-binding protein EngD
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_12
Parcubacteria bacterium GW2011_GWA2_52_8, Parcubacteria, Bacteria

Not on your lists

comp(9851..10699)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000367856A
Site-specific recombinase, DNA invertase Pin
Invertase protein {ECO:0000313|EMBL:KKW28555.1}; TaxID=1618857 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_52_8.;"
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10826..11494)
DNA (669bp) protein (223aa)
DNA invertase {ECO:0000313|EMBL:BAR57702.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficie
Putative DNA recombinase id=4790089 bin=GWC2_OD1_43_27 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Site-specific recombinase, DNA invertase Pin
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_14
GWB1_OD1_40_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(11491..11670)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003676A4C
Binding domain protein, excisionase family protein {ECO:0000313|EMBL:KKR38305.1}; TaxID=1618743 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_40_11.;
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_15
R_RIF_OD1_09_51_11, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(11825..12991)
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_51_11_curated
id=2008683 bin=GWD2_CPR2_39_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_16
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(13093..13383)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein id=67849 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_17
unknown

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13392..13514
DNA (123bp) protein (41aa)

This feature has no annotations

RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_18
GWB1_OD1_37_5, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13525..15117)
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QXI4_ISOPI
Uncharacterized protein {ECO:0000313|EMBL:KKQ35282.1}; TaxID=1618742 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_37_5.;"
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_19
R_OD1_Nomurabacteria_38_19, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

15196..15393
DNA (198bp) protein (66aa)
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_38_19_curated
hypothetical protein id=15191398 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_20

Not on your lists

15578..17434
DNA (1857bp) protein (619aa)
mod; type III restriction-modification system methyltransferase (EC:2.1.1.72)
Site-specific DNA-methyltransferase n=1 Tax=Lactobacillus plantarum subsp. plantarum NC8 RepID=H3P2M6_LACPN
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:KKU78071.1}; TaxID=1618845 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_64.;"
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_21
R_OD1_Falkowbacteria_44_11, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17438..20041
DNA (2604bp) protein (868aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5] Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_44_11_curated
res; type III restriction-modification system restriction subunit (EC:3.1.21.5)
Type III restriction enzyme, res subunit n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1V7_DESRM
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_22

Not on your lists

20055..20216
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS89813.1}; TaxID=1618908 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_11b.;"
id=1899237 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_23
R_RIF_OD1_09_50_13, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

20328..21161
DNA (834bp) protein (278aa)
dinD; DNA-damage-inducible protein, part of SOS response; K14623 DNA-damage-inducible protein D Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_09_50_13_curated
DNA-damage-inducible protein, part of SOS response id=1987435 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
dinD; DNA-damage-inducible protein, part of SOS response
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

21360..22739
DNA (1380bp) protein (460aa)
glmM; phosphomannomutase; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] id=5048690 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
glmM; phosphomannomutase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_25
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

22987..23235
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LS75_9FUSO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_26
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(23325..24305)
DNA (981bp) protein (327aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase id=4790119 bin=GWC2_OD1_43_27 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(24378..24881)
DNA (504bp) protein (168aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_28
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(25113..26936)
DNA (1824bp) protein (608aa)
toc:Toce_1227 RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] id=95824 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_trna_3
unknown

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comp(27170..27253)
DNA (84bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_3339_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(27290..28912)
DNA (1623bp) protein (541aa)
putative ABC transporter substrate binding protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
extracellular solute-binding protein family 5; K02035 peptide/nickel transport system substrate-binding protein id=95825 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
putative ABC transporter substrate binding protein
Displaying items 1-30 of 97 in total

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