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RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_1
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

1..180
DNA (180bp) protein (60aa)
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(177..695)
DNA (519bp) protein (173aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=84000 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

1416..1706
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

2250..2540
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(2847..3359)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XMQ6_DESMR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3576..4004)
DNA (429bp) protein (143aa)
lspG; type II secretory pathway protein LspG; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
seg 133..147 id=56714 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Type II secretion system protein G
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(4055..4429)
DNA (375bp) protein (125aa)
50S ribosomal protein L19 n=5 Tax=Pediococcus RepID=D2EI64_PEDAC
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplS; 50S ribosomal protein L19
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(4431..5054)
DNA (624bp) protein (208aa)
putative pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) id=15188673 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
putative pseudouridine synthase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(5051..5788)
DNA (738bp) protein (246aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tRNA (guanine-N(1)-)-methyltransferase id=2185696 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
trmD; tRNA (guanine-N(1)-)-methyltransferase
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(5827..6159)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Holliday junction ATP-dependent DNA helicase RuvB id=3087585 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(6246..6638)
DNA (393bp) protein (131aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S16 id=3544395 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S16
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_12
unknown

Not on your lists

comp(6762..6914)
DNA (153bp) protein (51aa)

This feature has no annotations

RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(7166..9373)
DNA (2208bp) protein (736aa)
Chromosome segregation protein SMC n=1 Tax=Turicibacter sp. PC909 RepID=D4W362_9FIRM id=8748 bin=ACD15 species=Turicibacter sanguinis genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
smc; chromosome segregation protein SMC; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
smc; chromosome segregation protein SMC
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(9377..9637)
DNA (261bp) protein (87aa)
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
GIY-YIG catalytic domain protein id=2933997 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
excinuclease ABC C subunit domain-containing protein
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(9656..10339)
DNA (684bp) protein (228aa)
putative ribonuclease III (EC:3.1.26.3) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
putative ribonuclease III (EC:3.1.26.3)
hypothetical protein id=5801635 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_trna_1
unknown

Not on your lists

comp(10523..10594)
DNA (72bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(10620..11579)
DNA (960bp) protein (320aa)
transmembrane_regions 26..48 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
transmembrane_regions 26..48 id=129947 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_02_FULL_OD1_48_21_rifcsphigho2_02_scaffold_13783_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(11581..13464)
DNA (1884bp) protein (628aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH id=3590936 bin=GWA2_CPR4_42_17 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Displaying 18 items

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