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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2..217
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI00037A118A
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(229..930)
-----------------
DNA (702bp)
protein (234aa)
glutamine amidotransferase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Glutamine amidotransferase id=2474085 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
glutamine amidotransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(1168..2880)
-----------------
DNA (1713bp)
protein (571aa)
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA polymerase id=4775058 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
PHP domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3029..3382
-----------------
DNA (354bp)
protein (118aa)
id=3223385 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=3223385 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3388..3675
-----------------
DNA (288bp)
protein (96aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein id=16784003 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3676..4104
-----------------
DNA (429bp)
protein (143aa)
Rieske (2Fe-2S) domain-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Rieske 2Fe-2S family protein id=2318335 bin=GWA2_OP3_53_43 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Rieske (2Fe-2S) domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4137..5069
-----------------
DNA (933bp)
protein (311aa)
Class I diheme cytochrome c n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIT9_AZOBR
Class I diheme cytochrome c Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Class I diheme cytochrome c
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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5148..5876
-----------------
DNA (729bp)
protein (243aa)
cytochrome b/b6 protein; K03887 menaquinol-cytochrome c reductase cytochrome b subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Cytochrome b/b6 domain protein id=4210294 bin=GWC2_Proteo_65_14_Ab886 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
cytochrome b/b6 protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(6010..7593)
-----------------
DNA (1584bp)
protein (528aa)
SNF family Na+-dependent transporter Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Transporter id=4178302 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
SNF family Na+-dependent transporter
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(7667..8902)
-----------------
DNA (1236bp)
protein (412aa)
Mammalian cell entry-like domain protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Mammalian cell entry-like domain protein
mammalian cell entry domain-containing protein; K02067 putative ABC transport system substrate-binding protein id=15192991 bin=GWC2_NOV_55_46 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(8980..9753)
-----------------
DNA (774bp)
protein (258aa)
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Ribonucleotide ABC transporter ATP-binding protein id=3350568 bin=GWC2_Nitrospirae_57_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(9760..10530)
-----------------
DNA (771bp)
protein (257aa)
organic solvents resistance ABC transporter permease; K02066 putative ABC transport system permease protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ABC-type transport system involved in resistance to organic solvents, permease component id=3894231 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
organic solvents resistance ABC transporter permease
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(10667..12811)
-----------------
DNA (2145bp)
protein (715aa)
glycoside hydrolase family 57 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
glycoside hydrolase family 57
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(12927..14156)
-----------------
DNA (1230bp)
protein (410aa)
glgC; glucose-1-phosphate adenylyltransferase; K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ank:AnaeK_0107 glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] id=18581 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
glgC; glucose-1-phosphate adenylyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(14283..15806)
-----------------
DNA (1524bp)
protein (508aa)
Serine protease do-like (EC:3.4.21.-) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Serine protease do-like (EC:3.4.21.-)
Protease Do id=4320716 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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16112..18004
-----------------
DNA (1893bp)
protein (631aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14431065 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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18091..18540
-----------------
DNA (450bp)
protein (150aa)
Heat shock protein Hsp20 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Heat shock protein Hsp20 id=3618323 bin=GWA2_Ignavibacteria_55_11 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Heat shock protein Hsp20
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18563..19186
-----------------
DNA (624bp)
protein (208aa)
Protein GrpE n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YL83_9BACT
grpE; Heat shock protein GrpE Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Heat shock protein GrpE
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2677_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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19344..21713
-----------------
DNA (2370bp)
protein (790aa)
Endonuclease MutS2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA8_9BACT
mutS2; MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
mutS2; MutS2 family protein
Displaying 19 items

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