ggKbase home page

RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2..487)
-----------------
DNA (486bp)
protein (162aa)
UPI0003CF6E6B related cluster n=1 Tax=unknown RepID=UPI0003CF6E6B
DGQHR domain-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DGQHR domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

900..1859
-----------------
DNA (960bp)
protein (320aa)
tRNA dimethylallyltransferase (EC:2.5.1.75) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tRNA dimethylallyltransferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z863_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1843..4137
-----------------
DNA (2295bp)
protein (765aa)
lytic transglycosylase domain protein; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI000363CE47
lytic transglycosylase domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4088..5800
-----------------
DNA (1713bp)
protein (571aa)
Adenine deaminase (EC:3.5.4.2) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Adenine deaminase (EC:3.5.4.2)
Adenine deaminase id=1943137 bin=GWB2_Elusimicrobium_63_22 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5836..6939
-----------------
DNA (1104bp)
protein (368aa)
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036653A0
thiouridylase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6932..7336
-----------------
DNA (405bp)
protein (135aa)
cbb3-type cytochrome oxidase, subunit 1 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein id=15193597 bin=GWC2_NOV_55_46 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
cytochrome oxidase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7350..8774)
-----------------
DNA (1425bp)
protein (475aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=crenarchaeote SCGC AAA261-N23 RepID=UPI00037062B3
phosphomethylpyrimidine kinase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8804..9199)
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7ULR2_DESML
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9348..9542)
-----------------
DNA (195bp)
protein (65aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9539..9889)
-----------------
DNA (351bp)
protein (117aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=2203605 bin=GWB2_Ignavibacteria_35_12 species=Sulfurospirillum deleyianum genus=Sulfurospirillum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9948..10961)
-----------------
DNA (1014bp)
protein (338aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZEC8_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11250..11795
-----------------
DNA (546bp)
protein (182aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(11802..13058)
-----------------
DNA (1257bp)
protein (419aa)
Fe-S oxidoreductase n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7INC9_DESMD
Fe-S oxidoreductase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Fe-S oxidoreductase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13205..13543)
-----------------
DNA (339bp)
protein (113aa)
ATP synthase C chain (EC:3.6.3.14); K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP synthase subunit C (EC:3.6.3.14)
F-type H+-transporting ATPase subunit a n=1 Tax=uncultured prokaryote RepID=H5SPA5_9ZZZZ
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13583..14275)
-----------------
DNA (693bp)
protein (231aa)
atpB-1; ATP synthase F0 subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
F0F1 ATP synthase subunit A n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00037FAE91
ATP synthase F0F1 subunit A
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14250..14564)
-----------------
DNA (315bp)
protein (105aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14564..14815)
-----------------
DNA (252bp)
protein (84aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=2914490 bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio hydrothermalis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14901..15617
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI000380AFDD
nucleotidyltransferase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
nucleotidyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15541..16320)
-----------------
DNA (780bp)
protein (260aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16322..17173)
-----------------
DNA (852bp)
protein (284aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Proline dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8A2_SPHTD
proline dehydrogenase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17221..17868)
-----------------
DNA (648bp)
protein (216aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI00037483D9
hypothetical protein; K09778 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18055..19092
-----------------
DNA (1038bp)
protein (346aa)
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E3N9_GEOLS
ribosomal RNA large subunit methyltransferase N
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19266..19997
-----------------
DNA (732bp)
protein (244aa)
Putative methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0APG2_IGNAJ
methyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

20101..22293
-----------------
DNA (2193bp)
protein (731aa)
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Ribonuclease R n=1 Tax=Caldicellulosiruptor lactoaceticus 6A RepID=G2PUI7_9FIRM
ribonuclease R
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22346..24235)
-----------------
DNA (1890bp)
protein (630aa)
peptidyl-prolyl cis-trans isomerse D (EC:5.2.1.8); K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00035EFC54
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2585_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(24436..25653)
-----------------
DNA (1218bp)
protein (406aa)
multi-sensor signal transduction histidine kinase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Two component system histidine kinase id=3358997 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
multi-sensor signal transduction histidine kinase
Displaying 26 items

View Taxonomy