ggKbase home page

RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1..468)
-----------------
DNA (468bp)
protein (156aa)
hypothetical protein; K09008 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4780002 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

513..1664
-----------------
DNA (1152bp)
protein (384aa)
glycosyltransferase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Glycosyltransferase id=2744489 bin=GWC2_Deltaproteobacteria_56_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
glycosyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1661..3091
-----------------
DNA (1431bp)
protein (477aa)
putative undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-)
capsular polysaccharide synthesis protein (cpsA) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Undecaprenyl-phosphate glucose phosphotransferase id=2009403 bin=GWB2_Proteobacteria_55_19 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3146..3955
-----------------
DNA (810bp)
protein (270aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase id=2522247 bin=GWC2_Deltaproteobacteria_42_51 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4002..5606
-----------------
DNA (1605bp)
protein (535aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
CTP synthase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z1I9_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5603..6436
-----------------
DNA (834bp)
protein (278aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
2-dehydro-3-deoxyphosphooctonate aldolase id=4536177 bin=GWC2_Nitrospirae_57_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6448..7197)
-----------------
DNA (750bp)
protein (250aa)
membrane protein n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003AAF911
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7257..8561)
-----------------
DNA (1305bp)
protein (435aa)
membrane-bound serine protease; K07403 membrane-bound serine protease (ClpP class) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Membrane-bound serine protease id=2217434 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
membrane-bound serine protease
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8664..9629
-----------------
DNA (966bp)
protein (322aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
GDP-mannose 4,6-dehydratase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C920_SPHTD
GDP-mannose 4,6-dehydratase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_14944_10
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

9738..10676
-----------------
DNA (939bp)
protein (313aa)
NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037647D6
NAD-dependent epimerase
Displaying 10 items

View Taxonomy