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RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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1..285
DNA (285bp) protein (95aa)
lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003636C6F
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(320..1327)
DNA (1008bp) protein (336aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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1665..4115
DNA (2451bp) protein (817aa)
Regulator of chromosome condensation n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMD0_MYXFH
regulator of chromosome condensation Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
regulator of chromosome condensation
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(4354..5721)
DNA (1368bp) protein (456aa)
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P8T4_DEFDS
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

5877..7442
DNA (1566bp) protein (522aa)
dapE; Succinyl-diaminopimelate desuccinylase (dapE) (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0LVJ8_9EURY
Succinyl-diaminopimelate desuccinylase (dapE)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7446..8732)
DNA (1287bp) protein (429aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein id=24432687 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

8940..9980
DNA (1041bp) protein (347aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=4 Tax=Thermoanaerobacter RepID=AROC_THEPX
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


10071..10454
DNA (384bp) protein (128aa)
30S ribosomal protein S16 n=1 Tax=Actinokineospora enzanensis RepID=UPI0003767D06
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

10509..10757
DNA (249bp) protein (83aa)
nucleic acid binding protein, containing KH domain; K06960 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
UPF0109 protein CcarbDRAFT_1215 id=1764504 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
nucleic acid binding protein, containing KH domain
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

10750..11190
DNA (441bp) protein (147aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=3524825 bin=GWF2_OP9_related_35_9 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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11284..11994
DNA (711bp) protein (237aa)
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00037CA030
tRNA (guanine-N(1)-)-methyltransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

11998..12537
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Dialister micraerophilus RepID=E4L7B8_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


12610..12981
DNA (372bp) protein (124aa)
50S ribosomal protein L19 n=2 Tax=Firmicutes RepID=R6QS31_9FIRM
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rplS; 50S ribosomal protein L19
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12968..13633
DNA (666bp) protein (222aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
signal peptidase I (EC:3.4.21.89)
UPI00020A99A0 related cluster id=3524836 bin=GWF2_OP9_related_35_9 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13687..14307
DNA (621bp) protein (207aa)
ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ribonuclease HII (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Desulfobacter curvatus RepID=UPI00037A18A5
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14359..14631
DNA (273bp) protein (91aa)
DNA-binding protein HU-beta; K03530 DNA-binding protein HU-beta Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA-binding protein HU-beta id=4195334 bin=GWF2_OP9_related_35_9 species=Providencia rustigianii genus=Providencia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
DNA-binding protein HU-beta
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(14807..19198)
DNA (4392bp) protein (1464aa)
activator of 2-hydroxyglutaryl-CoA dehydratase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
CoA-substrate-specific enzyme activase, putative id=1822854 bin=GWE2_Clostridiales_32_10 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
activator of 2-hydroxyglutaryl-CoA dehydratase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(19365..20003)
DNA (639bp) protein (213aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

20241..21431
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI00036E1E4C
hypothetical protein; K07133 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


21557..22606
DNA (1050bp) protein (350aa)
glycoprotease family metalloendopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Thermincola potens (strain JR) RepID=D5XCH2_THEPJ
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

22668..23954
DNA (1287bp) protein (429aa)
histidine kinase (EC:2.7.13.3) Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
histidine kinase (EC:2.7.13.3)
Integral membrane sensor signal transduction histidine kinase id=2482659 bin=GWC2_Deltaproteobacteria_42_51 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

24017..24295
DNA (279bp) protein (93aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000288043D
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

24353..25795
DNA (1443bp) protein (481aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thermincola potens (strain JR) RepID=D5XD90_THEPJ
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

25878..27329
DNA (1452bp) protein (484aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA2_FULL_WOR_1_36_21_curate
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=GATB_CARHZ
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

27329..27943
DNA (615bp) protein (205aa)
Radical SAM domain protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYW6_MAHA5
Radical SAM domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Radical SAM domain-containing protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(27940..30075)
DNA (2136bp) protein (712aa)
radical SAM domain protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
radical SAM domain protein id=128413 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(30237..30764)
DNA (528bp) protein (176aa)
Lipoprotein LpqB, GerMN domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=2187923 bin=GWE2_RBX1_39_32 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Lipoprotein LpqB, GerMN domain-containing protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_599_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(30727..31941)
DNA (1215bp) protein (405aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Paenibacillus sp. JC66 RepID=UPI00028834C3
Displaying 28 items

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