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13_1_40cm_2_scaffold_17154

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_17154_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..457
DNA (456bp) protein (152aa)
livM; branched-chain amino acid ABC transporter system, permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Inner-membrane translocator id=4849840 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
13_1_40cm_2_scaffold_17154_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

457..1422
DNA (966bp) protein (322aa)
Hypothetical conserved protein id=1703896 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_2_scaffold_17154_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1605..2765
DNA (1161bp) protein (387aa)
putative branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative branched chain amino acid ABC transporter substrate-binding protein id=4849842 bin=GWC2_Methylomirabilis_70_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_17154_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2787..3950
DNA (1164bp) protein (388aa)
putative branched chain amino acid ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Putative branched chain amino acid ABC transporter substrate-binding protein id=4254256 bin=GWC2_Methylomirabilis_70_24 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_17154_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4797..5552
DNA (756bp) protein (252aa)
LivF; ABC-type branched-chain amino acid transport systems, ATPase component; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
High-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) id=1703893 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_17154_6
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5565..6290
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B57045
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC43139.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_1_40cm_2_scaffold_17154_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6313..7584
DNA (1272bp) protein (424aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=1703891 bin=GWA2_Methylomirabilis_73_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_17154_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7581..8756
DNA (1176bp) protein (392aa)
putative acyl-CoA transferase/carnitine dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CoA-transferase family III protein id=1703890 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative acyl-CoA transferase/carnitine dehydratase
13_1_40cm_2_scaffold_17154_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8768..9916
DNA (1149bp) protein (383aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1) Tax=GWA2_Rokubacteria_73_35_curated
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase id=1703889 bin=GWA2_Methylomirabilis_73_35 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_17154_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9992..11278
DNA (1287bp) protein (429aa)
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport systems id=2644242 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type branched-chain amino acid transport systems
13_1_40cm_2_scaffold_17154_11
unknown

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comp(11468..12106)
DNA (639bp) protein (213aa)

This feature has no annotations

13_1_40cm_2_scaffold_17154_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12290..13207
DNA (918bp) protein (306aa)
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Branched-chain amino acid transport system permease protein LivM id=1703884 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_17154_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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13204..13929
DNA (726bp) protein (242aa)
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein id=14626071 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like); K01995 branched-chain amino acid transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
putative branched-chain amino acid ABC transporter, ATP-binding component (livG-like)
13_1_40cm_2_scaffold_17154_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13926..14588
DNA (663bp) protein (221aa)
ABC-type branched-chain amino acid transport systems, ATPase component id=4915468 bin=GWC2_Methylomirabilis_70_24 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
LivF; ABC-type branched-chain amino acid transport systems, ATPase component; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_17154_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(14585..14845)
DNA (261bp) protein (87aa)
hypothetical protein id=14425974 bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein Tax=CSP1_2_Dadabacteria
GYD family protein
13_1_40cm_2_scaffold_17154_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

15045..15968
DNA (924bp) protein (308aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) id=14626074 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
13_1_40cm_2_scaffold_17154_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16126..16875
DNA (750bp) protein (250aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_2_scaffold_17154_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16872..17651
DNA (780bp) protein (260aa)
fixA; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, beta subunit id=2475787 bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein subunit beta
13_1_40cm_2_scaffold_17154_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18237..18596
DNA (360bp) protein (120aa)
etfA2; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, alpha subunit id=3618731 bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
etfA1; electron transfer flavoprotein subunit alpha
13_1_40cm_2_scaffold_17154_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19679..21328
DNA (1650bp) protein (550aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14626084 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
13_1_40cm_2_scaffold_17154_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21343..22317
DNA (975bp) protein (325aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase id=3618743 bin=GWF2_Methylomirabilis_70_14 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 21 items

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